Journal Articles
Su, Guangxin, Wang, Hanchen, Zhang, Ying, Wilkins, Marc R., Canete, Pablo F., Yu, Di, Yang, Yang and Zhang, Wenjie (2025). Inferring gene regulatory networks by hypergraph generative model. Cell Reports Methods, 5 (4) 101026, 101026. doi: 10.1016/j.crmeth.2025.101026
Guo, Cui-Lian, Wang, Chong-Shu, Wang, Zhi-Chao, Liu, Fei-Fan, Liu, Lin, Yang, Yang, Li, Xia, Guo, Bei, Lu, Ruo-Yu, Liao, Bo, Liu, Jin-Xin, Wang, Hai, Song, Jia, Yao, Yin, Zhu, Li-Ping, Yu, Di and Liu, Zheng (2024). Granzyme K+CD8+ T cells interact with fibroblasts to promote neutrophilic inflammation in nasal polyps. Nature Communications, 15 (1) 10413, 1-22. doi: 10.1038/s41467-024-54685-1
Yang, Haotian, Wang, Haolu, He, Yaowu, Yang, Yang, Thompson, Erik W., Xia, Di, Burke, Leslie J., Cao, Lu, Hooper, John D., Roberts, Michael S., Crawford, Darrell H.G. and Liang, Xiaowen (2024). Identification and characterization of TM4SF1+ tumor self-seeded cells. Cell Reports, 43 (7) 114512, 1-24. doi: 10.1016/j.celrep.2024.114512
Kang, Hao, Sun, Hongjian, Yang, Yang, Tuong, Zewen K., Shu, Minglei, Wei, Yunbo, Zhang, Yu, Yu, Di and Tao, Yong (2023). Autoimmune uveitis in Behçet's disease and Vogt‐Koyanagi‐Harada disease differ in tissue immune infiltration and T cell clonality. Clinical and Translational Immunology, 12 (9) e1461, 1-17. doi: 10.1002/cti2.1461
Yang, Yang, Tuong, Zewen K. and Yu, Di (2023). Dimensionality reduction under scrutiny. Nature Computational Science, 3 (1), 8-9. doi: 10.1038/s43588-022-00383-1
Wang, Zhi-Chao, Yao, Yin, Chen, Cai-Ling, Guo, Cui-Lian, Ding, Hong-Xia, Song, Jia, Wang, Zhe-Zheng, Wang, Nan, Li, Xue-Li, Liao, Bo, Yang, Yang, Yu, Di and Liu, Zheng (2022). Extrafollicular PD-1highCXCR5–CD4+ T cells participate in local immunoglobulin production in nasal polyps. Journal of Allergy and Clinical Immunology, 149 (2), 610-623. doi: 10.1016/j.jaci.2021.06.023
Puri, Prianka, Jiang, Simon H., Yang, Yang, Mackay, Fabienne and Yu, Di (2021). Understand SLE heterogeneity in the era of omics, big data, and artificial intelligence. Rheumatology and Autoimmunity, 1 (1), 38-49. doi: 10.1002/rai2.12010
Yao, Yin, Chen, Zhian, Zhang, Hao, Chen, Cailing, Zeng, Ming, Yunis, Joseph, Wei, Yunbo, Wan, Yanmin, Wang, Naiqi, Zhou, Mingzhe, Qiu, Chao, Zeng, Qunxiong, Ong, Hong Sheng, Wang, Hao, Makota, Fadzai Victor, Yang, Yang, Yang, Zhaohui, Wang, Nan, Deng, Jun, Shen, Chao, Xia, Yan, Yuan, Lin, Lian, Zhaoqin, Deng, Yike, Guo, Cuilian, Huang, Ao, Zhou, Pengcheng, Shi, Haibo, Zhang, Weitian ... Yu, Di (2021). Selenium–GPX4 axis protects follicular helper T cells from ferroptosis. Nature Immunology, 22 (9), 1127-1139. doi: 10.1038/s41590-021-00996-0
Yang, Yang, Sun, Hongjian, Zhang, Yu, Zhang, Tiefu, Gong, Jialei, Wei, Yunbo, Duan, Yong-Gang, Shu, Minglei, Yang, Yuchen, Wu, Di and Yu, Di (2021). Dimensionality reduction by UMAP reinforces sample heterogeneity analysis in bulk transcriptomic data. Cell Reports, 36 (4) 109442, 109442. doi: 10.1016/j.celrep.2021.109442
Tan, Qiyue, Lv, Yuebin, Zhao, Feng, Zhou, Jinhui, Yang, Yang, Liu, Yingchun, Zhang, Mingyuan, Lu, Feng, Wei, Yuan, Chen, Xin, Zhang, Ruizhi, Chen, Chen, Wu, Bing, Zhang, Xiaochang, Li, Chengcheng, Huang, Hongyuan, Cai, Junfang, Cao, Zhaojin, Yu, Di, Ji, John S., Zhao, Shuhua and Shi, Xiaoming (2021). Association of low blood arsenic exposure with level of malondialdehyde among Chinese adults aged 65 and older. Science of the Total Environment, 758 143638, 1-8. doi: 10.1016/j.scitotenv.2020.143638
Yi, Shuhua, Zhang, Yu, Xiong, Wenjie, Chen, Weiwei, Hou, Zhaohua, Yang, Yang, Yan, Yuting, Wei, Yunbo, Cui, Rui, Wang, Huijun, Yu, Zhen, Li, Heng, Li, Zengjun, Liu, Wei, Lv, Rui, Wang, Tingyu, Ru, Kun, Zou, Dehui, Shu, Minglei, Qiu, Lugui and Yu, Di (2020). Prominent immune signatures of T cells are specifically associated with indolent B-cell lymphoproliferative disorders and predict prognosis. Clinical and Translational Immunology, 9 (1) e01105. doi: 10.1002/cti2.1105
Yang, Yang, Zhang, Wenjie, Zhang, Ying, Lin, Xuemin and Wang, Liping (2019). Selectivity estimation on set containment search. Data Science and Engineering, 4 (3), 254-268. doi: 10.1007/s41019-019-00104-1
Conference Papers
Yang, Yang, Zhang, Ying, Zhang, Wenjie and Huang, Zengfeng (2019). GB-KMV: an augmented KMV sketch for approximate containment similarity search. 2019 IEEE 35th International Conference on Data Engineering (ICDE), Macao, China, 8-11 April 2019. Piscataway, NJ USA: Institute of Electrical and Electronics Engineers. doi: 10.1109/icde.2019.00048
Yang, Yang, Zhang, Wenjie, Zhang, Ying, Lin, Xuemin and Wang, Liping (2019). Selectivity estimation on set containment search. 24th International Conference, DASFAA 2019, Chiang Mai, Thailand, 22–25 April 2019. Cham, Switzerland: Springer. doi: 10.1007/978-3-030-18576-3_20