Professor Mark Morrison

Morrison, Mark, Murtaza, Nida and Talley, Nicholas J. (2024). The importance of the microbiome in the gut. Clinical Understanding of the Human Gut Microbiome. (pp. 1-11) Cham, Switzerland: Springer Nature. doi: 10.1007/978-3-031-46712-7_1

O Cuiv, Páraic, Burman, Sriti, Pottenger, Sian and Morrison, Mark (2016). Exploring the bioactive landscape of the gut microbiota to identify metabolites underpinning human health. Microbial metabolomics: applications in clinical, environmental, and industrial microbiology. (pp. 49-82) edited by David J. Beale, Konstantinos A. Kouremenos and Enzo A. Palombo. Cham, Switzerland: Springer International Publishing. doi: 10.1007/978-3-319-46326-1_3

Yu, Zhongtang and Morrison, Mark (2011). Sequence-Based Characterization of Microbiomes by Serial Analysis of Ribosomal Sequence Tags (SARST). Handbook of Molecular Microbial Ecology I: Metagenomics and Complementary Approaches. (pp. 265-273) Hoboken, NJ, USA: John Wiley and Sons. doi: 10.1002/9781118010518.ch31

Klaassens, Eline S., Morrison, Mark and Highlander, Sarah K. (2011). Selection and sequencing of strains as references for human microbiome studies. Metagenomics of the Human Body. (pp. 79-90) New York, NY United States: Springer. doi: 10.1007/978-1-4419-7089-3_5

Yu, Zhongtang, Morrison, Mark and Schanbacher, Floyd L. (2010). Production and Utilization of Methane Biogas as Renewable Fuel. Biomass to Biofuels: Strategies for Global Industries. (pp. 403-433) Oxford, UK: Blackwell Publishing Ltd.. doi: 10.1002/9780470750025.ch20

Yu, Zhongtang and Morrison, Mark (2009). The gut microbiome: current understanding and future perspectives. Food-borne microbes: Shaping the host ecosystem. (pp. 19-40) edited by Lee-Ann Jaykus, Hua H. Wang and Larry S. Schlesinger. Washington, D.C., USA: ASM Press.

Morrison, Mark, Adams, Sarah E., Nelson, Karen F. and Attwood, Graeme T. (2005). Metagenomic analysis of the microbiomes in ruminants and other herbivores. Methods in gut microbial ecology for ruminants. (pp. 209-220) edited by Harinder P.S. Makkar and Christopher S. McSweeney. Dordrecht, The Netherlands: Springer. doi: 10.1007/1-4020-3791-0_17

Sternes, Peter R., Shah, Ayesha, Ayala Pintos, Camila, Fairlie, Thomas, Koloski, Natasha, Kang, Seungha, Tousignant, Kaylyn D., McIlroy, Simon J., Morrison, Mark, Tyson, Gene W. and Holtmann, Gerald J. (2024). The biogeography of the mucosa-associated microbiome in health and disease. Frontiers in Microbiology, 15 ARTN 1454910. doi: 10.3389/fmicb.2024.1454910

Chew, Charmaine, Matsuyama, Misa, Davies, Peter S. W., Hill, Rebecca J., Morrison, Mark, Martin, Rocio, Codoñer, Francisco M., Knol, Jan and Roeselers, Guus (2024). A young child formula supplemented with a synbiotic mixture of scGOS/lcFOS and Bifidobacterium breve M-16V improves the gut microbiota and iron status in healthy toddlers. Frontiers in Pediatrics, 12 ARTN 1193027. doi: 10.3389/fped.2024.1193027

Zheng, Jiaying, Sun, Qianru, Zhang, Mengjing, Liu, Chengyu, Su, Qi, Zhang, Lin, Xu, Zhilu, Lu, Wenqi, Ching, Jessica, Tang, Whitney, Cheung, Chun Pan, Hamilton, Amy L., Wilson O’Brien, Amy L., Wei, Shu Chen, Bernstein, Charles N., Rubin, David T., Chang, Eugene B., Morrison, Mark, Kamm, Michael A., Chan, Francis K. L., Zhang, Jingwan and Ng, Siew C. (2024). Noninvasive, microbiome-based diagnosis of inflammatory bowel disease. Nature Medicine. doi: 10.1038/s41591-024-03280-4

Hoedt, Emily C., Carroll, Georgia, Stephensen, Bree, Togher, Katie, Morrison, Mark, Vishnoi, Veral, Makanyengo, Samwel, Draganic, Brian, McManus, Brendan, Clarke, Louise, Shah, Kalpesh, Smith, Stephen R., Talley, Nicholas J., Keely, Simon and Pockney, Peter (2024). The Microleaks study: 16S community profile and metagenomic shotgun sequencing signatures associated with anastomotic leak. npj Gut and Liver, 1 (1) 6. doi: 10.1038/s44355-024-00006-8

Shah, Ayesha, Fairlie, Thomas, Morrison, Mark, Martin, Neal, Hammer, Karin, Hammer, Johann, Koloski, Natasha, Rezaie, Ali, Pimentel, Mark, Kashyap, Purna, Jones, Michael P. and Holtmann, Gerald (2024). Prevalence of small intestinal bacterial overgrowth in intestinal failure syndrome: A systematic review and meta‐analysis. Journal of Gastroenterology and Hepatology, 1-11. doi: 10.1111/jgh.16668

Ledger, Emma L, Smith, Daniel J, Teh, Jing Jie, Wood, Michelle E, Whibley, Page E, Morrison, Mark, Goldberg, Joanna B, Reid, David W and Wells, Timothy J (2024). Impact of CFTR Modulation on Pseudomonas aeruginosa Infection in People With Cystic Fibrosis. The Journal of Infectious Diseases, 230 (3), e536-e547. doi: 10.1093/infdis/jiae051

Chan, Samuel, Hawley, Carmel M., Pascoe, Elaine M., Cao, Christopher, Campbell, Katrina L., Campbell, Scott B., Francis, Ross S., Hale, Rachael, Isbel, Nicole M., Morrison, Mark and Johnson, David W. (2023). PREBIOTIC: a study protocol of a randomised controlled trial to assess prebiotic supplementation in kidney transplant recipients for preventing infections and gastrointestinal upset — a feasibility study. Pilot and Feasibility Studies, 9 (1) 11, 11. doi: 10.1186/s40814-023-01236-y

Volmer, James G., McRae, Harley and Morrison, Mark (2023). The evolving role of methanogenic archaea in mammalian microbiomes. Frontiers in Microbiology, 14 1268451, 1-21. doi: 10.3389/fmicb.2023.1268451

Shanahan, Erin R., Kang, Seungha, Staudacher, Heidi, Shah, Ayesha, Do, Anh, Burns, Grace, Chachay, Veronique S., Koloski, Natasha A., Keely, Simon, Walker, Marjorie M., Talley, Nicholas J., Morrison, Mark and Holtmann, Gerald J. (2023). Alterations to the duodenal microbiota are linked to gastric emptying and symptoms in functional dyspepsia. Gut, 72 (5) 326158, 929-938. doi: 10.1136/gutjnl-2021-326158

Shah, Ayesha, Pakeerathan, Veenaa, Jones, Michael P., Kashyap, Purna C., Virgo, Kate, Fairlie, Thomas, Morrison, Mark, Ghoshal, Uday C. and Holtmann, Gerald J. (2023). Small intestinal bacterial overgrowth complicating gastrointestinal manifestations of systemic sclerosis: a systematic review and meta-analysis. Journal of Neurogastroenterology and Motility, 29 (2), 132-144. doi: 10.5056/jnm22168

Volmer, James G., Soo, Rochelle M., Evans, Paul N., Hoedt, Emily C., Astorga Alsina, Ana L., Woodcroft, Benjamin J., Tyson, Gene W., Hugenholtz, Philip and Morrison, Mark (2023). Isolation and characterisation of novel Methanocorpusculum species indicates the genus is ancestrally host-associated. BMC Biology, 21 (1) 59, 1-17. doi: 10.1186/s12915-023-01524-2

Loayza, J.J. Jimenez, Kang, S., Schooth, L., Teh, J. J., de Klerk, A., Noon, E. K., Zhang, J., Hu, J., Hamilton, A. L., Wilson-O’Brien, A., Trakman, G. L., Lin, W., Ching, J., Or, L., Sung, J.J.Y., Yu, J., Ng, S.C., Kamm, M.A. and Morrison, M. (2023). Effect of food additives on key bacterial taxa and the mucosa-associated microbiota in Crohn’s disease. The ENIGMA study. Gut Microbes, 15 (1) 2172670, 1-18. doi: 10.1080/19490976.2023.2172670

Chan, Samuel, Wood, David LA, Hawley, Carmel M., Campbell, Katrina L., Campbell, Scott B., Cao, Christopher, Francis, Ross S., Hale, Rachael, Isbel, Nicole M., Pascoe, Elaine M., Johnson, David W. and Morrison, Mark (2023). Characteristics of the gastrointestinal microbiota following prebiotic supplementation in acute kidney transplant recipients: Results from a randomised controlled trial. Clinical Transplantation, 38 (1) e15175, e15175. doi: 10.1111/ctr.15175

Boytar, Alexander N., Nitert, Marloes Dekker, Morrision, Mark, Skinner, Tina L. and Jenkins, David G. (2022). Exercise‐induced changes to the human gut microbiota and implications for colorectal cancer: A narrative review. The Journal of Physiology, 600 (24), 5189-5201. doi: 10.1113/jp283702

Sternes, P. R., Brett, L., Phipps, J., Ciccia, F., Kenna, T., de Guzman, E., Zimmermann, K., Morrison, M., Holtmann, G., Klingberg, E., Mauro, D., McIvor, C., Forsblad-d’Elia, H. and Brown, M. A. (2022). Distinctive gut microbiomes of ankylosing spondylitis and inflammatory bowel disease patients suggest differing roles in pathogenesis and correlate with disease activity. Arthritis Research and Therapy, 24 (1) 163, 1-10. doi: 10.1186/s13075-022-02853-3

Thissen, James B., Morrison, Michael D., Mulakken, Nisha, Nelson, William C., Daum, Chris, Messenger, Sharon, Wadford, Debra A. and Jaing, Crystal (2022). Evaluation of co-circulating pathogens and microbiome from COVID-19 infections. PLoS One, 17 (12) e0278543, 1-20. doi: 10.1371/journal.pone.0278543

Shah, Ayesha, Kang, Seungha, Talley, Nicholas J., Do, Anh, Walker, Marjorie M., Shanahan, Erin R., Koloski, Natasha A., Jones, Michael P., Keely, Simon, Morrison, Mark and Holtmann, Gerald J. (2022). The duodenal mucosa associated microbiome, visceral sensory function, immune activation and psychological comorbidities in functional gastrointestinal disorders with and without self-reported non-celiac wheat sensitivity. Gut Microbes, 14 (1) 2132078, 1-21. doi: 10.1080/19490976.2022.2132078

Shah, Ayesha, Pakneeshan, Sahar, Jones, Michael P., Koloski, Natasha, Callaghan, Gavin, Morrison, Mark and Holtmann, Gerald (2022). How frequent are vancomycin-resistant enterococci in patients with primary sclerosing cholangitis and ulcerative colitis treated with oral vancomycin?. Indian Journal of Gastroenterology, 41 (5), 519-524. doi: 10.1007/s12664-022-01286-9

Trakman, Gina L., Lin, Winnie Y. Y., Hamilton, Amy L., Wilson-O’Brien, Amy L., Stanley, Annalise, Ching, Jessica Y., Yu, Jun, Mak, Joyce W. Y., Sun, Yang, Niu, Junkun, Miao, Yinglei, Lin, Xiaoqing, Feng, Rui, Chen, Minhu, Shivappa, Nitin, Hebert, James R., Morrison, Mark, Ng, Siew C. and Kamm, Michael A (2022). Processed food as a risk factor for the development and perpetuation of Crohn’s Disease—the ENIGMA study. Nutrients, 14 (17) 3627, 1-23. doi: 10.3390/nu14173627

Matsuyama, Misa, Murtaza, Nida, Morrison, Mark, Davies, Peter S. W., Hill, Rebecca J. and Loughman, Amy (2022). Cross‐sectional and longitudinal associations between gut microbiota composition and cognition in the second year of life: findings from the Child Health and Resident Microbes study. American Journal of Medical Genetics Part B: Neuropsychiatric Genetics, 189 (7-8), 285-292. doi: 10.1002/ajmg.b.32915

Shah, Ayesha, Thite, Parag, Hansen, Teressa, Kendall, Bradley J., Sanders, David S., Morrison, Mark, Jones, Michael P. and Holtmann, Gerald (2022). Links between celiac disease and small intestinal bacterial overgrowth: A systematic review and meta‐analysis. Journal of Gastroenterology and Hepatology, 37 (10), 1844-1852. doi: 10.1111/jgh.15920

Mak, Joyce W. Y., Yang, Sun, Stanley, Annalise, Lin, Xiaoqing, Morrison, Mark, Ching, Jessica Y. L., Niu, Junkun, Wilson-O'Brien, Amy L., Feng, Rui, Tang, Whitney, Hamilton, Amy L., Or, Leo, Trakman, Gina L., Lin, Winnie Y. Y., Sung, Joseph J. Y., Chen, Ming Hu, Mao, Yinglei, Kamm, Michael A. and Ng, Siew C. (2022). Childhood antibiotics as a risk factor for Crohn's disease: The ENIGMA International Cohort Study. JGH Open, 6 (6), 369-377. doi: 10.1002/jgh3.12755

Krueger, Annika, Mohamed, Ahmed, Kolka, Cathryn M., Stoll, Thomas, Zaugg, Julian, Linedale, Richard, Morrison, Mark, Soyer, H. Peter, Hugenholtz, Philip, Frazer, Ian H. and Hill, Michelle M. (2022). Skin cancer-associated S. aureus strains can induce DNA damage in human keratinocytes by downregulating DNA repair and promoting oxidative stress. Cancers, 14 (9) 2143, 2143. doi: 10.3390/cancers14092143

Giri, Rabina, Hoedt, Emily C., Khushi, Shamsunnahar, Salim, Angela A., Bergot, Anne-Sophie, Schreiber, Veronika, Thomas, Ranjeny, McGuckin, Michael A., Florin, Timothy H., Morrison, Mark, Capon, Robert J., Ó Cuív, Páraic and Begun, Jakob (2022). Secreted NF-κB suppressive microbial metabolites modulate gut inflammation. Cell Reports, 39 (2) 110646, 110646. doi: 10.1016/j.celrep.2022.110646

Chan, Samuel, Hawley, Carmel M., Pascoe, Elaine M., Cao, Christopher, Campbell, Scott B., Campbell, Katrina L., Francis, Ross S., Hale, Rachael, Isbel, Nicole M., Morrison, Mark and Johnson, David W. (2022). Prebiotic supplementation in kidney transplant recipients for preventing infections and gastrointestinal upset: a randomized controlled feasibility study. Journal of Renal Nutrition, 106 (9S), 718-725. doi: 10.1053/j.jrn.2022.02.006

Krueger, Annika, Zaugg, Julian, Lachner, Nancy, Bialasiewicz, Seweryn, Lin, Lynlee L., Gabizon, Sharon, Sobarun, Priyamvada, Morrison, Mark, Soyer, H. Peter, Hugenholtz, Philip and Frazer, Ian H. (2022). Changes in the skin microbiome associated with squamous cell carcinoma in transplant recipients. ISME Communications, 2 (1) 13, 13. doi: 10.1038/s43705-022-00095-7

Krueger, Annika, Zaugg, Julian, Chisholm, Sarah, Linedale, Richard, Lachner, Nancy, Teoh, Siok Min, Tuong, Zewen K., Lukowski, Samuel W., Morrison, Mark, Soyer, H. Peter, Hugenholtz, Philip, Hill, Michelle M. and Frazer, Ian H. (2022). Secreted toxins from Staphylococcus aureus strains isolated from keratinocyte skin cancers mediate pro-tumorigenic inflammatory responses in the skin. Frontiers in Microbiology, 12 789042, 789042. doi: 10.3389/fmicb.2021.789042

Movva, Ramya, Murtaza, Nida, Giri, Rabina, Png, Chin Wen, Davies, Julie, Alabbas, Saleh, Oancea, Iulia, O'Cuiv, Páraic, Morrison, Mark, Begun, Jakob and Florin, Timothy H. (2022). Successful Manipulation of the Gut Microbiome to Treat Spontaneous and Induced Murine Models of Colitis. Gastro Hep Advances, 1 (3), 359-374. doi: 10.1016/j.gastha.2021.12.008

McFarlane, Catherine, Krishnasamy, Rathika, Stanton, Tony, Savill, Emma, Snelson, Matthew, Mihala, Gabor, Kelly, Jaimon T., Morrison, Mark, Johnson, David W. and Campbell, Katrina L. (2021). Synbiotics Easing Renal Failure by Improving Gut Microbiology II (SYNERGY II): a feasibility randomized controlled trial. Nutrients, 13 (12) 4481, 4481. doi: 10.3390/nu13124481

McFarlane, Catherine, Krishnasamy, Rathika, Stanton, Tony, Savill, Emma, Snelson, Matthew, Mihala, Gabor, Morrison, Mark, Johnson, David W. and Campbell, Katrina L. (2021). Diet quality and protein-bound uraemic toxins: investigation of novel risk factors and the role of microbiome in chronic kidney disease. Journal of Renal Nutrition, 32 (5), 542-551. doi: 10.1053/j.jrn.2021.10.003

Hoedt, Emily C., Shanahan, Erin R., Keely, Simon, Shah, Ayesha, Burns, Grace L., Holtmann, Gerald J., Talley, Nicholas J. and Morrison, Mark (2021). Draft genome sequence of streptococcus salivarius AGIRA0003, isolated from functional gastrointestinal disorder duodenal tissue. Microbiology Resource Announcements, 10 (39) e00758, e0075821. doi: 10.1128/MRA.00758-21

Shah, Ayesha, Gurusamy, Saravana Ruban, Hansen, Teressa, Callaghan, Gavin, Talley, Nicholas J., Koloski, Natasha, Walker, Marjorie M., Jones, Michael P., Morrison, Mark and Holtmann, Gerald J. (2021). Concomitant irritable bowel syndrome does not influence the response to antimicrobial therapy in patients with functional dyspepsia. Digestive Diseases and Sciences, 67 (6), 2299-2309. doi: 10.1007/s10620-021-07149-1

Morrison, Michael D., Thissen, James B., Karouia, Fathi, Mehta, Satish, Urbaniak, Camilla, Venkateswaran, Kasthuri, Smith, David J. and Jaing, Crystal (2021). Investigation of spaceflight induced changes to astronaut microbiomes. Frontiers in Microbiology, 12 659179, 1-15. doi: 10.3389/fmicb.2021.659179

Teh, J. J., Berendsen, E. M., Hoedt, E. C., Kang, S., Zhang, J., Zhang, F., Liu, Q., Hamilton, A. L., Wilson-O’Brien, A., Ching, J., Sung, J. J. Y., Yu, J., Ng, S. C., Kamm, M. A. and Morrison, M. (2021). Novel strain-level resolution of Crohn’s disease mucosa-associated microbiota via an ex vivo combination of microbe culture and metagenomic sequencing. The ISME Journal, 15 (11), 3326-3338. doi: 10.1038/s41396-021-00991-1

Lim, Yenkai, Tang, Kai Dun, Karpe, Avinash V., Beale, David J., Totsika, Makrina, Kenny, Liz, Morrison, Mark and Punyadeera, Chamindie (2021). Chemoradiation therapy changes oral microbiome and metabolomic profiles in patients with oral cavity cancer and oropharyngeal cancer. Head and Neck, 43 (5), 1521-1534. doi: 10.1002/hed.26619

Gurusamy, Saravana Ruban, Shah, Ayesha, Talley, Nicholas J., Koloski, Natasha, Jones, Michael P., Walker, Marjorie M., Morrison, Mark and Holtmann, Gerald (2021). Small intestinal bacterial overgrowth in functional dyspepsia: a systematic review and meta-analysis. The American Journal of Gastroenterology, 116 (5), 935-942. doi: 10.14309/ajg.0000000000001197

Chan, Samuel, Morrison, Mark, Hawley, Carmel M., Campbell, Scott B., Francis, Ross S., Isbel, Nicole M., Pascoe, Elaine M. and Johnson, David W. (2021). Characteristics of the gastrointestinal microbiota in paired live kidney donors and recipients. Nephrology, 26 (5), 471-478. doi: 10.1111/nep.13853

Mori, Giorgia, Morrison, Mark and Blumenthal, Antje (2021). Microbiome-immune interactions in tuberculosis. PLoS Pathogens, 17 (4) e1009377, e1009377. doi: 10.1371/journal.ppat.1009377

Holtmann, Gerald, Shah, Ayesha and Morrison, Mark (2021). From trash to gold: Gastrointestinal microbiome research in patients with functional gastrointestinal disorders. Journal of Investigative Medicine, 69 (4), 793-795. doi: 10.1136/jim-2021-001903

Altemani, Faisal, Barrett, Helen L., Gomez-Arango, Luisa, Josh, Peter, McIntyre, H. David, Callaway, Leonie K., Morrison, Mark, Tyson, Gene W. and Dekker Nitert, Marloes (2021). Pregnant women who develop preeclampsia have lower abundance of the butyrate-producer Coprococcus in their gut microbiota. Pregnancy Hypertension, 23, 211-219. doi: 10.1016/j.preghy.2021.01.002

Moentadj, Rabia, Wang, Yiwen, Bowerman, Kate, Rehaume, Linda, Nel, Hendrik, O Cuiv, Paraic, Stephens, Juliette, Baharom, Amalina, Maradana, Muralidhara, Lakis, Vanessa, Morrison, Mark, Wells, Timothy, Hugenholtz, Philip, Benham, Helen, Le Cao, Kim-Anh and Thomas, Ranjeny (2021). Streptococcus species enriched in the oral cavity of patients with RA are a source of peptidoglycan-polysaccharide polymers that can induce arthritis in mice. Annals of the Rheumatic Diseases, 80 (5) annrheumdis-2020-219009, annrheumdis-2020. doi: 10.1136/annrheumdis-2020-219009

Zhang, Jingwan, Hoedt, Emily C., Liu, Qin, Berendsen, Erwin, Teh, Jing Jie, Hamilton, Amy, O' Brien, Amy Wilson, Ching, Jessica Y L, Wei, Hong, Yang, Keli, Xu, Zhilu, Wong, Sunny H., Mak, Joyce W. Y., Sung, Joseph J. Y., Morrison, Mark, Yu, Jun, Kamm, Michael A. and Ng, Siew C. (2021). Elucidation of Proteus mirabilis as a key bacterium in Crohn's Disease inflammation. Gastroenterology, 160 (1), 317-330.e11. doi: 10.1053/j.gastro.2020.09.036

Gandhi, Arjun, Shah, Ayesha, Jones, Michael P., Koloski, Natasha, Talley, Nicholas J., Morrison, Mark and Holtmann, Gerald (2021). Methane positive small intestinal bacterial overgrowth in inflammatory bowel disease and irritable bowel syndrome: a systematic review and meta-analysis. Gut Microbes, 13 (1) 1933313, 1-16. doi: 10.1080/19490976.2021.1933313

Holtmann, Gerald J., Huelsen, Alexander, Shah, Ayesha, Hourigan, Luke F. and Morrison, Mark (2021). Is a fundamental design change for gastrointestinal endoscopes required?. Journal of Clinical Gastroenterology, 55 (1), 21-24. doi: 10.1097/MCG.0000000000001430

Morrison, Michael D. and Nicholson, Wayne L. (2020). Comparisons of Transcriptome Profiles fromBacillus subtilisCells Grown in Space versus High Aspect Ratio Vessel (HARV) Clinostats Reveal a Low Degree of Concordance. Astrobiology, 20 (12), 1498-1509. doi: 10.1089/ast.2020.2235

Feng, Guangli, Mikkelsen, Deirdre, Hoedt, Emily C., Williams, Barbara A., Flanagan, Bernadine M., Morrison, Mark and Gidley, Michael J. (2020). In vitro fermentation outcomes of arabinoxylan and galactoxyloglucan depend on fecal inoculum more than substrate chemistry. Food and Function, 11 (9), 7892-7904. doi: 10.1039/d0fo01103g

Shah, Ayesha, Macdonald, Graeme A., Morrison, Mark and Holtmann, Gerald (2020). Targeting the gut microbiome as a treatment for primary sclerosing cholangitis: a conceptional framework. The American Journal of Gastroenterology, 115 (6), 814-822. doi: 10.14309/ajg.0000000000000604

Molendijk, Jeffrey, Nguyen, Thi-My-Tam, Brown, Ian, Mohamed, Ahmed, Lim, Yenkai, Barclay, Johanna, Hodson, Mark P., Hennessy, Thomas P., Krause, Lutz, Morrison, Mark and Hill, Michelle M. (2020). Chronic high-fat diet induces early Barrett’s esophagus in mice through lipidome remodeling. Biomolecules, 10 (5) 776, 776. doi: 10.3390/biom10050776

Adams, Leon A., Wang, Zhengyi, Liddle, Chris, Melton, Phillip E., Ariff, Amir, Chandraratna, Harsha, Tan, Jeremy, Ching, Helena, Coulter, Sally, de Boer, Bastiaan, Christophersen, Claus T., O'Sullivan, Therese A., Morrison, Mark and Jeffrey, Gary P. (2020). Bile acids associate with specific gut microbiota, low-level alcohol consumption and liver fibrosis in patients with non-alcoholic fatty liver disease. Liver International, 40 (6) liv.14453, 1356-1365. doi: 10.1111/liv.14453

Trakman, Gina L., Lin, Winnie, Wilson-O'Brien, Amy L., Stanley, Annalise, Hamilton, Amy L., Tang, Whitney, Or, Leo, Ching, Jessica, Morrison, Mark, Yu, Jun, Ng, Siew C. and Kamm, Michael A. (2020). Development and validation of surveys to estimate food additive intake. Nutrients, 12 (3) 812, 812. doi: 10.3390/nu12030812

Gordon, Catherine A., Krause, Lutz, McManus, Donald P., Morrison, Mark, Weerakoon, Kosala G., Connor, Mairead C., Olveda, Remigio M., Ross, Allen G. and Gobert, Geoffrey N. (2020). Helminths, polyparasitism, and the gut microbiome in the Philippines. International Journal for Parasitology, 50 (3), 217-225. doi: 10.1016/j.ijpara.2019.12.008

Shah, Ayesha, Talley, Nicholas J., Jones, Michael, Kendall, Bradley, Koloski, Natasha, Walker, Marjorie, Morrison, Mark and Holtmann, Gerald J. (2020). Small intestinal bacterial overgrowth in irritable bowel syndrome: a systematic review and meta-analysis of case-control studies. American Journal of Gastroenterology, 115 (2), 190-201. doi: 10.14309/ajg.0000000000000504

Yin, Jian, Sternes, Peter Richard, Wang, Mingbang, Song, Jing, Morrison, Mark, Li, Ting, Zhou, Ling, Wu, Xin, He, Fusheng, Zhu, Jian, Brown, Matthew A and Xu, Huji (2020). Shotgun metagenomics reveals an enrichment of potentially cross-reactive bacterial epitopes in ankylosing spondylitis patients, as well as the effects of TNFi therapy upon microbiome composition. Annals of the Rheumatic Diseases, 79 (1) 215763, 132-140. doi: 10.1136/annrheumdis-2019-215763

Stefia, Laurancia Vina, Lee, James, Patel, Jatin, de Sousa, Silmara Rodrigues, Legrand, Julien, Rodero, Mathieu, Burman, Sriti, Linedale, Richard, Morrison, Mark and Khosrotehrani, Kiarash (2020). Secretome components from Faecalibacterium prausnitzii strains A2-165 and AHMP21 modulate cutaneous wound inflammation. Journal of Investigative Dermatology, 140 (11), 2312-2315.e6. doi: 10.1016/j.jid.2020.02.027

Shah, Ayesha, Talley, Nicholas J., Koloski, Natasha, Macdonald, Graeme A., Kendall, Bradley J., Shanahan, Erin R., Walker, Marjorie M., Keely, Simon, Jones, Michael P., Morrison, Mark and Holtmann, Gerald J. (2020). Duodenal bacterial load as determined by quantitative polymerase chain reaction in asymptomatic controls, functional gastrointestinal disorders and inflammatory bowel disease. Alimentary Pharmacology and Therapeutics, 52 (1), 155-167. doi: 10.1111/apt.15786

Smith-Brown, Paula, Morrison, Mark, Krause, Lutz and Davies, Peter S. W. (2019). Microbiota and body composition during the period of complementary feeding. Journal of Pediatric Gastroenterology and Nutrition, 69 (6), 726-732. doi: 10.1097/MPG.0000000000002490

Chan, Samuel, Hawley, Carmel M., Campbell, Katrina L., Morrison, Mark, Campbell, Scott B., Isbel, Nicole M., Francis, Ross S., Playford, E. Geoffrey and Johnson, David W. (2019). Transplant associated infections, – the role of the gastrointestinal microbiota and potential therapeutic options. Nephrology, 25 (1) nep.13670, 5-13. doi: 10.1111/nep.13670

Chan, Samuel, Isbel, Nicole M., Hawley, Carmel M., Campbell, Scott B., Campbell, Katrina L., Morrison, Mark, Francis, Ross S., Playford, E Geoffrey and Johnson, David W. (2019). Infectious complications following kidney transplantation-A focus on hepatitis C infection, cytomegalovirus infection and novel developments in the gut microbiota. Medicina, 55 (10) 672, 672. doi: 10.3390/medicina55100672

Matsuyama, Misa, Morrison, Mark, Cao, Kim-Anh Lê, Pruilh, Solange, Davies, Peter S. W., Wall, Clare, Lovell, Amy and Hill, Rebecca J. (2019). Dietary intake influences gut microbiota development of healthy Australian children from the age of one to two years. Scientific Reports, 9 (1) 12476, 12476. doi: 10.1038/s41598-019-48658-4

Raj, Ashok S., Shanahan, Erin R., Tran, Cuong D., Bhat, Purnima, Fletcher, Linda M., Vesey, David A., Morrison, Mark, Holtmann, Gerald and Macdonald, Graeme A. (2019). Dysbiosis of the Duodenal Mucosal Microbiota Is Associated With Increased Small Intestinal Permeability in Chronic Liver Disease. Clinical and Translational Gastroenterology, 10 (8) e00068, e00068. doi: 10.14309/ctg.0000000000000068

Chellappa, Karthikeyani, Brinkman, Jacqueline A., Mukherjee, Sarmistha, Morrison, Mark, Alotaibi, Mohammed, Carbajal, Kathryn A., Alhadeff, Amber L., Perron, Isaac J., Yao, Rebecca, Purdy, Cole S., DeFelice, Denise M., Wakai, Matthew H., Tomasiewicz, Jay, Lin, Amy, Meyerz, Emma, Peng, Yajing, Apelo, Sebastian I. Arriola, Puglielli, Luigi, Betley, J. Nicholas, Paschos, Georgios K., Baur, Joseph A. and Lamming, Dudley W. (2019). Hypothalamic mTORC2 is essential for metabolic health and longevity. Aging Cell, 18 (5) ARTN e13014. doi: 10.1111/acel.13014

Murtaza, Nida, Burke, Louise, Vlahovich, Nicole, Charlesson, Bronwen, O’Neill, Hayley, Ross, Megan, Campbell, Katrina, Krause, Lutz and Morrison, Mark (2019). Analysis of the effects of dietary pattern on the oral microbiome of elite endurance athletes. Nutrients, 11 (3) 614, 614. doi: 10.3390/nu11030614

Shah, Ayesha, Morrison, Mark, Burger, Daniel, Martin, Neal, Rich, Justin, Jones, Mike, Koloski, Natasha, Walker, Marjorie M., Talley, Nicholas J. and Holtmann, Gerald J. (2019). Systematic review with meta-analysis: the prevalence of small intestinal bacterial overgrowth in inflammatory bowel disease. Alimentary Pharmacology and Therapeutics, 49 (6), 624-635. doi: 10.1111/apt.15133

Murtaza, Nida, Burke, Louise, Vlahovich, Nicole, Charlesson, Bronwen, O’ Neill, Hayley, Ross, Megan, Campbell, Katrina, Krause, Lutz and Morrison, Mark (2019). The effects of dietary pattern during intensified training on stool microbiota of elite race walkers. Nutrients, 11 (2) 261, 261. doi: 10.3390/nu11020261

Callaway, Leonie K., McIntyre, H. David, Barrett, Helen L., Foxcroft, Katie, Tremellen, Anne, Lingwood, Barbara E., Tobin, Jacinta M., Wilkinson, Shelley, Kothari, Alka, Morrison, Mark, O’Rourke, Peter, Pelecanos, Anita and Dekker Nitert, Marloes (2019). Probiotics for the prevention of gestational diabetes mellitus in overweight and obese women: findings from the SPRING double-blind randomized controlled trial. Diabetes Care, 42 (3), dc182248-371. doi: 10.2337/dc18-2248

Shah, Ayesha, Crawford, Darrel, Burger, Daniel, Martin, Neal, Walker, Marjorie, Talley, Nicholas J., Tallis, Caroline, Jones, Michael, Stuart, Katherine, Keely, Simon, Lewindon, Peter, MacDonald, Graeme A., Morrison, Mark and Holtmann, Gerald J. (2019). Effects of antibiotic therapy in primary sclerosing cholangitis with and without inflammatory bowel disease: a systematic review and meta-analysis. Seminars in Liver Disease, 39 (4), 432-441. doi: 10.1055/s-0039-1688501

Matsuyama, M., Gomez-Arango, L. F., Fukuma, N. M., Morrison, M., Davies, P. S. W. and Hill, R. J. (2018). Breastfeeding: a key modulator of gut microbiota characteristics in late infancy. Journal of Developmental Origins of Health and Disease, 10 (02), 1-8. doi: 10.1017/s2040174418000624

Wood, David L. A., Lachner, Nancy, Tan, Jean-Marie, Tang, Stephanie, Angel, Nicola, Laino, Antonia, Linedale, Richard, Lê Cao, Kim-Anh, Morrison, Mark, Frazer, Ian H., Soyer, H. Peter and Hugenholtz, Philip (2018). A natural history of actinic keratosis and cutaneous squamous cell carcinoma microbiomes. MBio, 9 (5) e01432-18. doi: 10.1128/mBio.01432-18

Fajardo-Cavazos, Patricia, Morrison, Michael D., Miller, Kathleen M., Schuerger, Andrew C. and Nicholson, Wayne L. (2018). Transcriptomic responses of Serratia liquefaciens cells grown under simulated Martian conditions of low temperature, low pressure, and CO₂-enriched anoxic atmosphere. Scientific Reports, 8 (1) ARTN 14938. doi: 10.1038/s41598-018-33140-4

Morrison, Michael D. and Nicholson, Wayne L. (2018). Meta-analysis of data from spaceflight transcriptome experiments does not support the idea of a common bacterial "spaceflight response". Scientific Reports, 8 (1) ARTN 14403. doi: 10.1038/s41598-018-32818-z

Shah, Ayesha, Morrison, Mark and Holtmann, Gerald (2018). A novel treatment for patients with constipation: dawn of a new age for translational microbiome research?. Indian Journal of Gastroenterology, 37 (5), 388-391. doi: 10.1007/s12664-018-0912-3

Shanahan, Erin R., Shah, Ayesha, Koloski, Natasha, Walker, Marjorie M., Talley, Nicholas J., Morrison, Mark and Holtmann, Gerald J. (2018). Influence of cigarette smoking on the human duodenal mucosa-associated microbiota. Microbiome, 6 (1) 150, 150. doi: 10.1186/s40168-018-0531-3

Lim, Yenkai, Fukuma, Naoki, Totsika, Makrina, Kenny, Liz, Morrison, Mark and Punyadeera, Chamindie (2018). The performance of an oral microbiome biomarker panel in predicting oral cavity and oropharyngeal cancers. Frontiers in Cellular and Infection Microbiology, 8 (AUG) 267, 267. doi: 10.3389/fcimb.2018.00267

Hamilton, Amy L., Kamm, Michael A., Ng, Siew C. and Morrison, Mark (2018). Proteus spp. as putative gastrointestinal pathogens. Clinical Microbiology Reviews, 31 (3) e00085-17. doi: 10.1128/CMR.00085-17

Smith-Brown, Paula, Morrison, Mark, Krause, Lutz, Newby, Ruth and Davies, Peter Sw (2018). Growth and protein-rich food intake in infancy is associated with fat-free mass index at 2-3 years of age. Journal of Paediatrics and Child Health, 54 (7), 770-775. doi: 10.1111/jpc.13863

So, Daniel, Whelan, Kevin, Rossi, Megan, Morrison, Mark, Holtmann, Gerald, Kelly, Jaimon T., Shanahan, Erin R., Staudacher, Heidi M. and Campbell, Katrina L. (2018). Dietary fiber intervention on gut microbiota composition in healthy adults: a systematic review and meta-analysis. The American Journal of Clinical Nutrition, 107 (6), 965-983. doi: 10.1093/ajcn/nqy041

Warren, Frederick J., Fukuma, Naoki M., Mikkelsen, Deirdre, Flanagan, Bernadine M., Williams, Barbara A., Lisle, Allan T., Ó Cuív, Páraic, Morrison, Mark and Gidley, Michael J. (2018). Food starch structure impacts gut microbiome composition. mSphere, 3 (3) e00086-18. doi: 10.1128/mSphere.00086-18

Holtmann, Gerald, Shah, Ayesha and Morrison, Mark (2018). Pathophysiology of Functional Gastrointestinal Disorders: A Holistic Overview. Digestive Diseases (Basel, Switzerland), 35 (1), 5-13. doi: 10.1159/000485409

Smith-Brown, Paula, Morrison, Mark, Krause, Lutz and Davies, Peter S. W. (2018). Male-specific association between fat-free mass index and fecal microbiota in 2- to 3-year-old Australian children. Journal of Pediatric Gastroenterology and Nutrition, 66 (1), 147-151. doi: 10.1097/MPG.0000000000001780

Lynch, Jason P., Werder, Rhiannon B., Loh, Zhixuan, Sikder, Md Al Amin, Curren, Bodie, Zhang, Vivian, Rogers, Matthew J. , Lane, Katie, Simpson, Jennifer, Mazzone, Stuart B., Spann, Kirsten, Hayball, John, Diener, Kerrilyn, Everard, Mark L., Blyth, Christopher C., Forstner, Christian, Dennis, Paul G., Murtaza, Nida, Morrison, Mark, Ó Cuív, Páraic, Zhang, Ping, Haque, Ashraful, Hill, Geoffrey R., Sly, Peter D., Upham, John W. and Phipps, Simon (2017). Plasmacytoid dendritic cells protect from viral bronchiolitis and asthma through semaphorin 4a-mediated T reg expansion. The Journal of Experimental Medicine, 215 (2), 537-557. doi: 10.1084/jem.20170298

Gomez-Arango, Luisa F, Barrett, Helen L, Wilkinson, Shelley A, Callaway, Leonie K, McIntyre, H David, Morrison, Mark and Nitert, Marloes Dekker (2017). Low dietary fiber intake increases Collinsella abundance in the gut microbiota of overweight and obese pregnant women. Gut microbes, 9 (3), 1-13. doi: 10.1080/19490976.2017.1406584

Shiffman, Miriam E, Soo, Rochelle M, Dennis, Paul G, Morrison, Mark, Tyson, Gene W and Hugenholtz, Philip (2017). Gene and genome-centric analyses of koala and wombat fecal microbiomes point to metabolic specialization for Eucalyptus digestion. PeerJ, 5, 1-32. doi: 10.7717/peerj.4075

Shah, Ayesha, Shanahan, Erin, Macdonald, Graeme A., Fletcher, Linda, Ghasemi, Pegah, Morrison, Mark, Jones, Mike and Holtmann, Gerald (2017). Systematic Review and Meta-Analysis: Prevalence of Small Intestinal Bacterial Overgrowth in Chronic Liver Disease. Seminars in Liver Disease, 37 (4), 388-400. doi: 10.1055/s-0037-1608832

Morrison, Michael D., Fajardo-Cavazos, Patricia and Nicholson, Wayne L. (2017). Cultivation in Space Flight Produces Minimal Alterations in the Susceptibility of Bacillus subtilis Cells to 72 Different Antibiotics and Growth-Inhibiting Compounds. Applied and Environmental Microbiology, 83 (21) ARTN e01584-17. doi: 10.1128/AEM.01584-17

Cuív, Páraic Ó., de Wouters, Tomas, Giri, Rabina, Mondot, Stanislas, Smith, Wendy J., Blottière, Hervé M., Begun, Jakob and Morrison, Mark (2017). The gut bacterium and pathobiont Bacteroides vulgatus activates NF-κB in a human gut epithelial cell line in a strain and growth phase dependent manner. Anaerobe, 47, 209-217. doi: 10.1016/j.anaerobe.2017.06.002

Benevides, Leandro, Burman, Sriti, Martin, Rebecca, Robert, Veronique, Thomas, Muriel, Miquel, Sylvie, Chain, Florian, Sokol, Harry, Bermudez-Humaran, Luis G., Morrison, Mark, Langella, Philippe, Azevedo, Vasco A., Chatel, Jean-Marc and Soares, Siomar (2017). New insights into the diversity of the genus Faecalibacterium. Frontiers in Microbiology, 8 (SEP) 1790, 1790. doi: 10.3389/fmicb.2017.01790

Shanahan, Erin R., Holtmann, Gerald and Morrison, Mark (2017). Life in the small intestine: the forgotten microbiome?. Microbiology Australia, 38 (3), 116-121. doi: 10.1071/MA17045

Lim, Yenkai, Totsika, Makrina, Morrison, Mark and Punyadeera, Chamindie (2017). The saliva microbiome profiles are minimally affected by collection method or DNA extraction protocols. Scientific Reports, 7 (1) 8523, 8523. doi: 10.1038/s41598-017-07885-3

Weimar, M. R., Cheung, J., Dey, D., McSweeney, C., Morrison, M., Kobayashi, Y., Whitman, W. B., Carbone, V., Schofield, L. R., Ronimus, R. S. and Cook, G. M. (2017). Development of multiwell-plate methods using pure cultures of methanogens to identify new inhibitors for suppressing ruminant methane emissions. Applied and Environmental Microbiology, 83 (15) e00396-17, 722-725. doi: 10.1128/AEM.00396-17

Gomez-Arango, Luisa F. , Barrett, Helen. L. , McIntyre, H. David, Callaway, Leonie K., Morrison, Mark and Nitert, Marloes Dekker (2017). Contributions of the maternal oral and gut microbiome to placental microbial colonization in overweight and obese pregnant women. Scientific Reports, 7 (1) 03066, 2860.1-2860.10. doi: 10.1038/s41598-017-03066-4

Gomez-Arango, Luisa F., Barrett, Helen L., McIntyre, H. David., Callaway, Leonie K., Morrison, Mark and Nitert, Marloes Dekker (2017). Corrigendum: Antibiotic treatment at delivery shapes the initial oral microbiome in neonates (vol 7, 43481, 2017). Scientific Reports, 7 (1) 45615. doi: 10.1038/srep45615

Morrison, Mark and Holtmann, Gerald (2017). Translating our microbiome into medicine. Medical Journal of Australia, 206 (7), 287-288. doi: 10.5694/mja17.00087

Shah, Ayesha, Talley, Nicholas J., Walker, Marjorie, Koloski, Natasha, Morrison, Mark, Burger, Daniel, Andrews, Jane M., McGuckin, Michael, Jones, Mike and Holtmann, Gerald (2017). Is there a link between H. Pylori and the epidemiology of Crohn’s disease?. Digestive Diseases and Sciences, 62 (9), 1-9. doi: 10.1007/s10620-017-4496-z

Murtaza, Nida, O Cuiv, Paraic and Morrison, Mark (2017). Diet and the microbiome. Gastroenterology Clinics of North America, 46 (1), 49-60. doi: 10.1016/j.gtc.2016.09.005

Gomez-Arango, Luisa F., Barrett, Helen L., McIntyre, H. David, Callaway, Leonie K., Morrison, Mark and Dekker Nitert, Marloes (2017). Antibiotic treatment at delivery shapes the initial oral microbiome in neonates. Scientific Reports, 7 (1) 43481, 43481. doi: 10.1038/srep43481

Smith-Brown, P., Morrison, M., Krause, L. and Davies, P. S. W. (2016). Dairy and plant based food intakes are associated with altered faecal microbiota in 2 to 3 year old Australian children. Scientific Reports, 6 (1) 32385, 32385. doi: 10.1038/srep32385

Budden, Kurtis F. , Gellatly, Shaan L. , Wood, David L., Cooper, Matthew A. , Morrison, Mark, Hugenholtz, Philip and Hansbro, Philip M. (2016). Emerging pathogenic links between microbiota and the gut-lung axis.. Nature Reviews Microbiology, 15 (1), 55-63. doi: 10.1038/nrmicro.2016.142

Gomez-Arango, Luisa F., Barrett, Helen L., McIntyre, H. David, Callaway, Leonie K., Morrison, Mark and Dekker Nitert, Marloes (2016). Increased systolic and diastolic blood pressure is associated with altered gut microbiota composition and butyrate production in early pregnancy. Hypertension, 68 (4), 974-981. doi: 10.1161/HYPERTENSIONAHA.116.07910

Gomez-Arango, Luisa F., Barrett, Helen L, McIntyre, H. David, Callaway, Leonie K., Morrison, Mark, Nitert, Marloes Dekker, SPRING Trial Group, Kang, Alicia, Shanahan, Erin, Fukuma, Naoki, Angel, Nicola and Wilkinson, Shelley (2016). Connections between the gut microbiome and metabolic hormones in early pregnancy in overweight and obese women. Diabetes, 65 (8), 2214-2223. doi: 10.2337/db16-0278

Smith-Brown, Paula, Morrison, Mark, Krause, Lutz and Davies, Peter S. W. (2016). Mothers secretor status affects development of childrens microbiota composition and function: a pilot study. Plos One, 11 (9) e0161211, e0161211. doi: 10.1371/journal.pone.0161211

Shanahan, E. R., Zhong, L., Talley, N. J., Morrison, M. and Holtmann, G. (2016). Letter: investigating the intestinal mucosa-associated microbiota - relevance and potential pitfalls. Authors' reply.. Alimentary Pharmacology and Therapeutics, 44 (6), 648-649. doi: 10.1111/apt.13741

Zhong, Laurie, Shanahan, Erin R., Raj, Ashok, Koloski, Natasha A., Fletcher, Linda, Morrison, Mark, Walker, Marjorie M., Talley, Nicholas J. and Holtmann, Gerald (2016). Dyspepsia and the microbiome: time to focus on the small intestine. Gut, 66 (6), 1168-+. doi: 10.1136/gutjnl-2016-312574

Ormerod, Kate L., Wood, David L. A., Lachner, Nancy, Gellatly, Shaan L., Daly, Joshua N., Parsons, Jeremy D., Dal’Molin, Cristiana G. O., Palfreyman, Robin W., Nielsen, Lars K., Cooper, Matthew A., Morrison, Mark, Hansbro, Philip M. and Hugenholtz, Philip (2016). Genomic characterization of the uncultured Bacteroidales family S24-7 inhabiting the guts of homeothermic animals. Microbiome, 4 (1) 36, 36.1-36.17. doi: 10.1186/s40168-016-0181-2

Hoedt, Emily C., Cuív, Páraic Ó. and Morrison, Mark (2016). Methane matters: from blue-tinged moos, to boozy roos, and the health of humans too. Animal Frontiers, 6 (3), 15-21. doi: 10.2527/af.2016-0029

Wong, M-L, Inserra, A., Lewis, M. D., Mastronardi, C. A., Leong, L., Choo, J., Kentish, S., Xie, P., Morrison, M., Wesselingh, S. L., Rogers, G. B. and Licinio, J. (2016). Inflammasome signaling affects anxiety- and depressive-like behavior and gut microbiome composition. Molecular Psychiatry, 21 (6), 797-805. doi: 10.1038/mp.2016.46

Shanahan, E., Zhong, L., Talley, N. J., Morrison, M. and Holtmann, G. (2016). Characterisation of the gastrointestinal mucosa-associated microbiota: a novel technique to prevent cross-contamination during endoscopic procedures. Alimentary Pharmacology and Therapeutics, 43 (11), 1186-1196. doi: 10.1111/apt.13622

Hoedt, Emily C., O Cuiv, Paraic, Evans, Paul N., Smith, Wendy J., McSweeney, Chris S., Denman, Stuart E. and Morrison, Mark (2016). Differences down-under: alcohol-fueled methanogenesis by archaea present in Australian macropodids. ISME Journal, 10 (10), 2376-2388. doi: 10.1038/ismej.2016.41

Burman, S., Hoedt, E., Pottenger, S., Mohd-Najman, N.-S, O Cuiv, P. and Morrison, M. (2016). An (anti)-inflammatory microbiota: defining the role in inflammatory bowel disease?. Digestive Diseases, 34 (1-2), 64-71. doi: 10.1159/000443759

O Cuiv, Paraic, Begun, Jake, Keely, Simon, Lewindon, Peter and Morrison, Mark (2016). Towards an integrated understanding of the therapeutic utility of exclusive enteral nutrition in the treatment of Crohn's disease. Food and Function, 7 (4), 1741-1751. doi: 10.1039/C5FO01196E

Rossi, Megan, Johnson, David W., Morrison, Mark, Pascoe, Elaine M., Coombes, Jeff S., Forbes, Josephine M., Szeto, Cheuk-Chun, McWhinney, Brett C., Ungerer, Jacobus P. J. and Campbell, Katrina L. (2016). Synbiotics easing renal failure by improving gut microbiology (SYNERGY): a randomized trial. Clinical Journal of the American Society of Nephrology, 11 (2), 223-231. doi: 10.2215/CJN.05240515

Zhang, L., Gowardman, J., Morrison, M., Runnegar, N. and Rickard, C. M. (2016). Microbial biofilms associated with intravascular catheter-related bloodstream infections in adult intensive care patients. European Journal of Clinical Microbiology and Infectious Diseases, 35 (2), 201-205. doi: 10.1007/s10096-015-2530-7

Abdul Rahman, Nurdyana, Parks, Donovan H., Vanwonterghem, Inka, Morrison, Mark, Tyson, Gene W. and Hugenholtz, Philip (2016). A phylogenomic analysis of the bacterial phylum fibrobacteres. Frontiers in Microbiology, 6 (JAN) 1469, 1469.1-1469.15. doi: 10.3389/fmicb.2015.01469

Zhang, L., Marsh, N., Long, D., Wei, M., Morrison, M. and Rickard, C. M. (2015). Microbial diversity on intravascular catheters from paediatric patients. European Journal of Clinical Microbiology and Infectious Diseases, 34 (12), 2463-2470. doi: 10.1007/s10096-015-2504-9

Cuiv, Paraic O, Smith, Wendy J, Pottenger, Sian, Burman, Sriti, Shanahan, Erin R and Morrison, Mark (2015). Isolation of genetically tractable most-wanted bacteria by metaparental mating. Scientific Reports, 5 (1) 13282, 13282. doi: 10.1038/srep13282

Fagan, Kevin J., Rogers, Geraint B., Melino, Michelle, Arthur, Dionne M., Costello, Mary-Ellen, Morrison, Mark, Powell, Elizabeth E. and Irvine, Katharine M. (2015). Ascites bacterial burden and immune cell profile are associated with poor clinical outcomes in the absence of overt infection. PLoS One, 10 (3) e0120642, e0120642. doi: 10.1371/journal.pone.0120642

Hoedt, Emily, Evans, Paul, Denman, Stuart E., McSweeney, Chris S., Ó Cuív, Paraic and Morrison, Mark (2015). Methane matters in animals and man: from beginning to end. Microbiology Australia, 36 (1), 4-7. doi: 10.1071/MA15003

De Cruz, Peter, Kang, Seungha, Wagner, Josef, Buckley, Michael, Sim, Winnie H., Prideaux, Lani, Lockett, Trevor, McSweeney, Chris, Morrison, Mark, Kirkwood, Carl D. and Kamm, Michael A. (2015). Association between specific mucosa-associated microbiota in Crohn's disease at the time of resection and subsequent disease recurrence: a pilot study. Journal of Gastroenterology and Hepatology, 30 (2), 268-278. doi: 10.1111/jgh.12694

Holtmann, G. J., Talley, N. J. and Morrison, M. (2014). Letter: inverse correlation between Helicobacter pylori and obesity - a conclusion too early? Authors' reply. Alimentary Pharmacology and Therapeutics, 40 (9), 1120-1120. doi: 10.1111/apt.12967

Rehaume, Linda, Mondot, Stanislas, Aguirre de Cárcer, Daniel, Velasco, Jared, Benham, Helen, Hasnain, Sumaira Zia, Bowman, Jaclyn, Ruutu, Merja, Hansbro, Philip M., McGuckin, Michael, Morrison, Mark and Thomas, Ranjeny (2014). ZAP-70 genotype disrupts the relationship between microbiota and host leading to spondyloarthritis and ileitis in SKG Mice. Arthritis and Rheumatology, 66 (10), 2780-2792. doi: 10.1002/art.38773

Kim, M., Wang, L., Morrison, M. and Yu, Z. (2014). Development of a phylogenetic microarray for comprehensive analysis of ruminal bacterial communities. Journal of Applied Microbiology, 117 (4), 949-960. doi: 10.1111/jam.12598

Kyrpides, Nikos C., Hugenholtz, Philip, Eisen, Jonathan A., Woyke, Tanja, Goker, Markus, Parker, Charles T., Amann, Rudolf, Beck, Brian J., Chun, Jongsik, Colwell, Rita R., Danchin, Antoine, Dawyndt, Peter, Dedeurwaerdere, Tom, DeLong, Edward F., Detter, John C., De Vos, Paul, Donohue, Timothy J., Dong, Xiu-Zhu, Ehrlich, Dusko S., Fraser, Claire, Gibbs, Richard, Gilbert, Jack, Gilna, Paul, Glockner, Frank Oliver, Jansson, Janet K., Keasling, Jay D., Knight, Rob, Labeda, David, Lapidus, Alla ... Klenk, Hans-Peter (2014). Genomic encyclopedia of bacteria and archaea: sequencing a myriad of type strains. PLoS Biology, 12 (8) e1001920, e1001920.1-e1001920.7. doi: 10.1371/journal.pbio.1001920

Dassa, Bareket, Borovok, Ilya, Ruimy-Israeli, Vered, Lamed, Raphael, Flint, Harry J., Duncan, Sylvia H., Henrissat, Bernard, Coutinho, Pedro, Morrison, Mark, Mosoni, Pascale, Yeoman, Carl J., White, Bryan A. and Bayer, Edward A. (2014). Rumen cellulosomics: divergent fiber-degrading strategies revealed by comparative genome-wide analysis of six ruminococcal strains. PLoS One, 9 (7) e99221, e99221.1-e99221.14. doi: 10.1371/journal.pone.0099221

Rossi, Megan, Johnson, David W., Morrison, Mark, Pascoe, Elaine, Coombes, Jeff S., Forbes, Josephine M., McWhinney, Brett C., Ungerer, Jacobus P. J., Dimeski, Goce and Campbell, Katrina L. (2014). SYNbiotics Easing Renal failure by improving Gut microbiologY (SYNERGY): a protocol of placebo-controlled randomised cross-over trial. BMC Nephrology, 15 (1) 106, 106.1-106.10. doi: 10.1186/1471-2369-15-106

Zhang, L., Gowardman, J., Morrison, M., Krause, L., Playford, E. G. and Rickard, C. M. (2014). Molecular investigation of bacterial communities on intravascular catheters: no longer just Staphylococcus. European Journal of Clinical Microbiology and Infectious Diseases, 33 (7), 1189-1198. doi: 10.1007/s10096-014-2058-2

Ó Cuív, Páraic, Klaassens, Eline S., Smith, Wendy J., Mondot, Stanislas, Durkin, A. Scott, Harkins, Derek M., Foster, Les, McCorrison, Jamison, Torralba, Manolito, Nelson, Karen E. and Morrison, Mark (2014). Draft genome sequence of Enterococcus faecium PC4.1, a clade B strain isolated from human feces. Genome Announcements, 2 (1) e00022-14, e00022-14.1-e00022-14.2. doi: 10.1128/genomeA.00022-14

Zhang, Li, Morrison, Mark and Rickard, Claire M . (2014). Draft genome sequence of Ralstonia pickettii AU12-08, isolated from an intravascular catheter in Australia.. Genome Announcements, 2 (1) e00027-14, 1-2. doi: 10.1128/genomeA.00027-14

Gagen, Emma J., Wang, Jiakun, Padmanabha, Jagadish, Liu, Jing, de Carvalho, Isabela Pena Carvalho, Liu, Jianxin, Webb, Richard I., Al Jassim, Rafat, Morrison, Mark, Denman, Stuart E. and McSweeney, Christopher S. (2014). Investigation of a new acetogen isolated from an enrichment of the tammar wallaby forestomach. BMC Microbiology, 14 (1) 314, 314. doi: 10.1186/s12866-014-0314-3

Lender, N., Talley, N. J., Enck, P., Haag, S., Zipfel, S., Morrison, M. and Holtmann, G. J. (2014). Review article: Associations between Helicobacter pylori and obesity - An ecological study. Alimentary Pharmacology and Therapeutics, 40 (1), 24-31. doi: 10.1111/apt.12790

Rosewarne, Carly P., Pope, Phillip B., Cheung, Jane L. and Morrison, Mark (2014). Analysis of the bovine rumen microbiome reveals a diversity of Sus-like polysaccharide utilization loci from the bacterial phylum Bacteroidetes. Journal of Industrial Microbiology and Biotechnology, 41 (3), 601-606. doi: 10.1007/s10295-013-1395-y

Prideaux L., Kang S., Wagner J., Buckley M., Mahar J.E., De Cruz P., Wen Z., Chen L., Xia B., Van Langenberg D.R., Lockett T., Ng S.C., Sung J.J.Y., Desmond P., McSweeney C., Morrison M., Kirkwood C.D. and Kamm M.A. (2013). Impact of ethnicity, geography, and disease on the microbiota in health and inflammatory bowel disease. Inflammatory Bowel Diseases, 19 (13), 2906-2918. doi: 10.1097/01.MIB.0000435759.05577.12

Wang L., Hatem A., Catalyurek U.V., Morrison M. and Yu Z. (2013). Metagenomic insights into the carbohydrate-active enzymes carried by the microorganisms adhering to solid digesta in the rumen of cows. PLoS ONE, 8 (11) e78507, e78507.1-e78507.11. doi: 10.1371/journal.pone.0078507

Ó Cuív, Páraic, Gupta, Rajesh, Goswami, Hareshwar P. and Morrison, Mark (2013). Extending the cellulosome paradigm: the modular clostridium thermocellum cellulosomal serpin pinA is a broad-spectrum inhibitor of subtilisin-like proteases. Applied and Environmental Microbiology, 79 (19), 6173-6175. doi: 10.1128/AEM.01912-13

Morrison M. (2013). Looking large, to make more, out of gut metagenomics. Current Opinion in Microbiology, 16 (5), 630-635. doi: 10.1016/j.mib.2013.10.003

Kang S.H., Evans P., Morrison M. and Mcsweeney C. (2013). Identification of metabolically active proteobacterial and archaeal communities in the rumen by DNA- and RNA-derived 16S rRNA gene. Journal of Applied Microbiology, 115 (3), 644-653. doi: 10.1111/jam.12270

Zhang, L., Morrison, M., Nimmo, G. R., Sriprakash, K. S., Mondot, S., Gowardman, J. R., George, N., Marsh, N. and Rickard, C. M. (2013). Molecular investigation of bacterial communities on the inner and outer surfaces of peripheral venous catheters. European Journal of Clinical Microbiology and Infectious Diseases, 32 (8), 1083-1090. doi: 10.1007/s10096-013-1854-4

Zhang, Li, Morrison, Mark, Ó Cuív, Páraic and Rickard, Claire M. (2013). Genome sequence of Stenotrophomonas maltophilia strain AU12-09, isolated from an intravascular catheter. Genome Announcements, 1 (3) e00195-13, e00195-13.1-e00195-13.2. doi: 10.1128/genomeA.00195-13

Wei, S., Morrison, M. and Yu, Z. (2013). Bacterial census of poultry intestinal microbiome. Poultry Science, 92 (3), 671-683. doi: 10.3382/ps.2012-02822

Ó Cuív, Páraic, Klaassens, Eline S., Smith, Wendy J., Mondot, Stanislas, Durkin, A. Scott, Harkins, Derek M., Foster, Les, McCorrison, Jamison, Torralba, Manolito, Nelson, Karen E. and Morrison, Mark (2013). Draft genome sequence of Enterococcus faecalis PC1.1, a candidate probiotic strain isolated from human feces. Genome Announcements, 1 (1) e00160-12, e00160-12.1-e00160-12.2. doi: 10.1128/genomeA.00160-12

Zhang, Li, Morrison, Mark, Ó Cuív, Páraic, Evans, Paul and Rickard, Claire M. (2012). Genome sequence of Staphylococcus epidermidis strain AU12-03, isolated from an intravascular catheter. Journal of Bacteriology, 194 (23), 6639-6639. doi: 10.1128/JB.01693-12

Pope, Phillip B., Mackenzie, Alasdair K., Gregor, Ivan, Smith, Wendy, Sundset, Monica A., McHardy, Alice C., Morrison, Mark and Eijsink, Vincent G.H. (2012). Metagenomics of the svalbard reindeer rumen microbiome reveals abundance of polysaccharide utilization loci. PLoS ONE, 7 (6) e38571, e38571.1-e38571.10. doi: 10.1371/journal.pone.0038571

De Cruz, Peter, Prideaux, Lani, Wagner, Josef, Ng, Siew C., McSweeney, Chris, Kirkwood, Carl, Morrison, Mark and Kamm, Michael A. (2012). Characterization of the gastrointestinal microbiota in health and inflammatory bowel disease. Inflammatory Bowel Diseases, 18 (2), 372-390. doi: 10.1002/ibd.21751

Mackenzie, A. K., Pope, P. B., Pedersen, H. L., Gupta, R., Morrison, M., Willats, W. G. T. and Eijsink, V. G. H. (2012). Two SusD-like proteins encoded within a polysaccharide utilization locus of an uncultured ruminant Bacteroidetes phylotype bind strongly to cellulose. Applied and Environmental Microbiology, 78 (16), 5935-5937. doi: 10.1128/AEM.01164-12

Rosewarne, Carly P., Cheung, Jane L., Smith, Wendy J. M., Evans, Paul N., Tomkins, Nigel W., Denman, Stuart E., O Cuiv, Paraic and Morrison, Morrison (2012). Draft genome sequence of Treponema sp. strain JC4, a novel spirochete isolated from the bovine rumen. Journal of Bacteriology, 194 (15), 4130-4130. doi: 10.1128/JB.00754-12

Wang, Lingling, Oda, Yukiko, Grewal, Sukhbir, Morrison, Mark, Michel Jr., Frederick C. and Yu, Zhongtang (2012). Persistence of Resistance to Erythromycin and Tetracycline in Swine Manure During Simulated Composting and Lagoon Treatments. Microbial Ecology, 63 (1), 32-40. doi: 10.1007/s00248-011-9921-9

Ziemer, C. J., Kerr, B. J., Weber, T. E., Arcidiacono, S., Morrison, M. and Ragauskas, A. (2012). Effects of feeding fiber-fermenting bacteria to pigs on nutrient digestion, fecal output, and plasma energy metabolites. Journal of Animal Science, 90 (11), 4020-4027. doi: 10.2527/jas.2012-5193

Xia, Qing, Williams, Timberly, Hustead, Deborah, Price, Pamela, Morrison, Mark and Yu, Zhongtang (2012). Quantitative analysis of intestinal bacterial populations from term infants fed formula supplemented with fructo-oligosaccharides. Journal of Pediatric Gastroenterology and Nutrition, 55 (3), 314-320. doi: 10.1097/MPG.0b013e3182523254

Nelson, Michael C., Morrison, Mark, Schanbacher, Floyd and Yu, Zhongtang (2012). Shifts in microbial community structure of granular and liquid biomass in response to changes to infeed and digester design in anaerobic digesters receiving food-processing wastes. Bioresource Technology, 107, 135-143. doi: 10.1016/j.biortech.2011.12.070

Stiverson, Jill, Morrison, Mark and Yu, Zhongtang (2011). Populations of select cultured and uncultured bacteria in the rumen of sheep and the effect of diets and ruminal fractions. International Journal of Microbiology, 2011 750613, 1-8. doi: 10.1155/2011/750613

de Carcer, Daniel Aguirre, Denman, Stuart E., McSweeney, Chris and Morrison, Mark (2011). Strategy for modular tagged high-throughput amplicon sequencing. Applied and Environmental Microbiology, 77 (17), 6310-6312. doi: 10.1128/AEM.05146-11

Pope, P. B., Smith, W., Denman, S. E., Tringe, S. G., Barry, K., Hugenholtz, P., McSweeney, C. S., McHardy, A. C. and Morrison, M. (2011). Isolation of Succinivibrionaceae implicated in low methane emissions from Tammar wallabies. Science, 333 (6042), 646-648. doi: 10.1126/science.1205760

Attwood, G. T., Altermann, E., Kelly, W. J., Leahy, S. C., Zhang, L. and Morrison, M. (2011). Exploring rumen methanogen genomes to identify targets for methane mitigation strategies. Animal Feed Science and Technology, 166-167, 65-75. doi: 10.1016/j.anifeedsci.2011.04.004

de Carcer, Daniel Aguirre, Ó Cuív, Páraic, Wang, Tingting, Kang, Seungha, Worthley, Daniel, Whitehall, Vicki, Gordon, Iain, McSweeney, Chris, Leggett, Barbara and Morrison, Mark (2011). Numerical ecology validates a biogeographical distribution and gender-based effect on mucosa-associated bacteria along the human colon. ISME Journal, 5 (5), 801-809. doi: 10.1038/ismej.2010.177

Christophersen, C. T., Morrison, M. and Conlon, M. A. (2011). Overestimation of the abundance of sulfate-reducing bacteria in human feces by quantitative PCR targeting the Desulfovibrio 16S rRNA gene. Applied and Environmental Microbiology, 77 (10), 3544-3546. doi: 10.1128/AEM.02851-10

Patil, Kaustubh R., Haider, Peter, Pope, Phillip B., Turnbaugh, Peter J., Morrison, Mark, Scheffer, Tobias and McHardy, Alice C. (2011). Taxonomic metagenome sequence assignment with structured output models. Nature Methods, 8 (3), 191-192. doi: 10.1038/nmeth0311-191

Ó Cuív, Páraic, de Carcer, Daniel Aguirre, Jones, Michelle, Klaassens, Eline S., Worthley, Daniel L., Whitehall, Vicki L. J., Kang, Seungha, McSweeney, Christopher S., Leggett, Barbara A. and Morrison, Mark (2011). The effects from DNA extraction methods on the evaluation of microbial diversity associated with human colonic tissue. Microbial Ecology, 61 (2), 353-362. doi: 10.1007/s00248-010-9771-x

Rosewarne, Carly P., Pope, Phillip B., Denman, Stuart E., McSweeney, Christopher S., O'Cuiv, Paraic and Morrison, Mark (2011). High-yield and phylogenetically robust methods of DNA recovery for analysis of microbial biofilms adherent to plant biomass in the herbivore gut. Microbial Ecology, 61 (2), 448-454. doi: 10.1007/s00248-010-9745-z

Pope, Phillip B., Totsika, Makrina, de Carcer, Daniel Aguirre, Schembri, Mark A. and Morrison, Mark (2011). Muramidases found in the foregut microbiome of the Tammar wallaby can direct cell aggregation and biofilm formation. ISME Journal, 5 (2), 341-350. doi: 10.1038/ismej.2010.116

Kabel, Mirjam A., Yeoman, Carl J., Han, Yejun, Dodd, Dylan, Abbas, Charles A., de Bont, Jan A. M., Morrison, Mark, Cann, Isaac K. O. and Mackie, Roderick I. (2011). Biochemical characterization and relative expression levels of multiple carbohydrate esterases of the xylanolytic rumen bacterium Prevotella ruminicola 23 grown on an ester-enriched substrate. Applied and Environmental Microbiology, 77 (16), 5671-5681. doi: 10.1128/AEM.05321-11

de Carcer, Daniel Aguirre, Denman, Stuart E., McSweeney, Chris and Morrison, Mark (2011). Evaluation of subsampling-based normalization strategies for tagged high-throughput sequencing data sets from gut microbiomes. Applied and Environmental Microbiology, 77 (24), 8795-8798. doi: 10.1128/AEM.05491-11

Ó Cuív, Páraic, Klaassens, Eline S., Durkin, A. Scott, Harkins, Derek M., Foster, Les, McCorrison, Jamison, Torralba, Manolito, Nelson, Karen E. and Morrison, Mark (2011). Draft genome sequence of Bacteroides vulgatus PC510, a strain isolated from human feces. Journal of Bacteriology, 193 (15), 4025-4026. doi: 10.1128/JB.05256-11

O Cuív, Paraic, Klaassens, Eleine S., Durkin, A. Scott, Harkins, Derek M., Foster, Les, McCorrison, Jamison, Torralba, Manolito, Nelson, Karen E. and Morrison, Mark (2011). Draft genome sequence of Turicibacter sanguinis PC909, isolated from human feces. Journal of Bacteriology, 193 (5), 1288-1289. doi: 10.1128/JB.01328-10

Kim, Minseok, Morrison, Mark and Yu, Zhongtang (2011). Phylogenetic diversity of bacterial communities in bovine rumen as affected by diets and microenvironments. Folia Microbiologica, 56 (5), 453-458. doi: 10.1007/s12223-011-0066-5

Kim, Minseok, Morrison, Mark and Yu, Zhongtang (2011). Evaluation of different partial 16S rRNA gene sequence regions for phylogenetic analysis of microbiomes. Journal of Microbiological Methods, 84 (1), 81-87. doi: 10.1016/j.mimet.2010.10.020

Kim, Minseok, Morrison, Mark and Yu, Zhongtang (2011). Status of the phylogenetic diversity census of ruminal microbiomes. FEMS Microbiology Ecology, 76 (1), 49-63. doi: 10.1111/j.1574-6941.2010.01029.x

Mondot, S., Kang, S., Furet, J.P., Aguirre De Carcer, D., McSweeney, C., Morrison, M., Marteau, P., Dore, J. and Leclerc, M. (2011). Highlighting new phylogenetic specificities of Crohn's disease microbiota. Inflammatory Bowel Diseases, 17 (1), 185-192. doi: 10.1002/ibd.21436

Nelson, Michael C., Morrison, Mark and Yu, Zhongtang (2011). A meta-analysis of the microbial diversity observed in anaerobic digesters. Bioresource Technology, 102 (4), 3730-3739. doi: 10.1016/j.biortech.2010.11.119

Slevin, Mark, Badimon, Lina, Grau-Olivares, Marta, Morrison, Mark and Krupinski, Jerzy (2011). Nanotechnology as a basis for the vascular treatment of atherosclerosis. International Journal of Nanotechnology, 8 (8-9), 618-630. doi: 10.1504/IJNT.2011.041434

Gagen, Emma J., Denman, Stuart E., Padmanabha, Jagadish, Zadbuke, Someshwar, Al Jassim, Rafat, Morrison, Mark and McSweeney, Christopher S. (2010). Functional gene analysis suggests different acetogen populations in the Bovine Rumen and Tammar Wallaby Forestomach. Applied and Environmental Microbiology, 76 (23), 7785-7795. doi: 10.1128/AEM.01679-10

Pope, P. B., Denman, S. E., Jones, M., Tringe, S. G., Barry, K., Malfatti, S. A., McHardy, A. C., Cheng, J. F., Hugenholtz, P., McSweeney, C. S. and Morrison, M. (2010). Adaptation to herbivory by the Tammar wallaby includes bacterial and glycoside hydrolase profiles different from other herbivores. Proceedings of the National Academy of Sciences of the United States of America, 107 (33), 14793-1-14798-6. doi: 10.1073/pnas.1005297107

Chen, Jing, Michel Jr., Frederick C., Sreevatsan, Srinand, Morrison, Mark and Yu, Zhongtang (2010). Occurrence and Persistence of Erythromycin Resistance Genes (erm) and Tetracycline Resistance Genes (tet) in Waste Treatment Systems on Swine Farms. Microbial Ecology, 60 (3), 479-486. doi: 10.1007/s00248-010-9634-5

Kang, Seungha, Denman, Stuart E., Morrison, Mark, Yu, Zhongtang, Dore, Joel, Leclerc, Marion and McSweeney, Chris S. (2010). Dysbiosis of fecal microbiota in Crohn's disease patients as revealed by a custom phylogenetic microarray. Inflammatory Bowel Diseases, 16 (12), 2034-2042. doi: 10.1002/ibd.21319

Morrison, Mark, Daugherty, Sean C., Nelson, William C., Davidsen, Tanja, Nelson, Karen E. and The North American Consortium for Fibrolytic Ruminal Bacteria (2010). The FibRumBa database: a resource for biologists with interests in gastrointestinal microbial ecology, plant biomass degradation, and anaerobic microbiology. Microbial Ecology, 59 (2), 212-213. doi: 10.1007/s00248-009-9562-4

Purushe, Janaki, Fouts, Derrick E., Morrison, Mark, White, Bryan A., Mackie, Roderick I., North American Consortium for Rumen Bacteria, Coutinho, Pedro M., Henrissat, Bernard and Nelson, Karen E. (2010). Comparative Genome Analysis of Prevotella ruminicola and Prevotella bryantii: Insights into Their Environmental Niche. Microbial Ecology, 60 (4), 721-729. doi: 10.1007/s00248-010-9692-8

McSweeney, Christopher, Kang, Seungha, Gagen, Emma, Davis, Carl, Morrison, Mark and Denman, Stuart (2009). Recent developments in nucleic acid based techniques for use in rumen manipulation. Revista Brasileira De Zootecnia-Brazilian Journal of Animal Science, 38 (spe), 341-351. doi: 10.1590/S1516-35982009001300034

Morrison, Mark, Pope, Phillip B., Denman, Stuart E. and McSweeney, Christopher S. (2009). Plant biomass degradation by gut microbiomes: More of the same or something new?. Current Opinion in Biotechnology, 20 (3), 358-363. doi: 10.1016/j.copbio.2009.05.004

Kang, Seungha, Denham, Stuart E., Morrison, Mark, Zhongtang, Yu and McSweeney, Chris S. (2009). An efficient RNA extraction method for estimating gut microbial diversity by polymerase chain reaction. Current Microbiology, 58 (5), 464-471. doi: 10.1007/s00284-008-9345-z

Sharma, Ranjana, Larney, Francis J., Chen, Jing, Yanke, L. Jay, Morrison, Mark, Topp, Edward, McAllister, Tim A. and Yu, Zhongtang (2009). Selected antimicrobial resistance during composting of manure from cattle administered sub-therapeutic antimicrobials. Journal of Environmental Quality, 38 (2), 567-575. doi: 10.2134/jeq2007.0638

Evans, Paul N., Hinds, Lyn A., Sly, Lindsay I., McSweeney, Christopher S., Morrison, Mark and Wright, Andre-Denis G. (2009). Community composition and density of methanogens in the foregut of the Tammar wallaby (Macropus eugenii). Applied and Environmental Microbiology, 75 (8), 2598-2602. doi: 10.1128/AEM.02436-08

Sylvester, J.T., Karnati, S.K.R., Dehority, B.A., Morrison, M., Smith, G.L., St-Pierre, N.R. and Firkins, J.L. (2009). Rumen ciliated protozoa decrease generation time and adjust 18S ribosomal DNA copies to adapt to decreased transfer interval, starvation, and monensin. Journal of Dairy Science, 92 (1), 256-269. doi: 10.3168/jds.2008-1417

Ezer, Anat, Matalon, Erez, Jindou, Sadanari, Borovok, Ilya, Atamna, Nof, Zhongtang, Yu, Morrison, Mark, Bayer, Edward A. and Lamed, Raphael (2008). Cell surface enzyme attachment is mediated by family 37 carbohydrate-binding modules, unique to Ruminococcus albus. Journal of Bacteriology, 190 (24), 8220-8222. doi: 10.1128/JB.00609-08

Chen, J., Fluharty, F.L., St-Pierre, N., Morrison, M. and Yu, Z. (2008). Technical note: Occurrence in fecal microbiota of genes conferring resistance to both macrolide-lincosamide-streptogramin B and tetracyclines concomitant with feeding of beef cattle with tylosin. Journal of Animal Science, 86 (9), 2385-2391. doi: 10.2527/jas.2007-0705

Zhongtang, Yu, García-González, Rubén, Schanbacher, Floyd L. and Morrison, Mark (2008). Evaluations of different hypervariable regions of archaeal 16S rRNA Genes in profiling of methanogens by archaea-specific PCR and denaturing gradient gel electrophoresis. Applied and Environmental Microbiology, 74 (3), 889-893. doi: 10.1128/AEM.00684-07

Anderson, Kyle, Yu, Zhongtang, Chen, Jing, Jenkins, Julie, Courtney, Polly and Morrison, Mark (2008). Analyses of Bifidobacterium, Lactobacillus, and total bacterial populations in healthy volunteers consuming calcium gluconate by denaturing gradient gel electrophoresis and real-time PCR. International Journal of Probiotics and Prebiotics, 3 (1), 31-36.

Qi, M., Nelson, K. E., Daugherty, S. C., Nelson, W. C., Hance, I. R., Morrison, M. and Forsberg, C. W. (2008). Genomic differences between Fibrobacter succinogenes S85 and Fibrobacter intestinalis DR7, identified by suppression subtractive hybridization. Applied and Environmental Microbiology, 74 (4), 987-993. doi: 10.1128/AEM.02514-07

Morrison, M., McSweeney, C. S. and Wright, A.-D. G. (2007). The vertebrate animal gut in context - microbiomes, metagenomes and methane. Microbiology Australia, 28 (3), 107-110.

Chen, Jing, Yu, Zhongtang, Michel, Frederick C., Wittum, Thomas and Morrison, Mark (2007). Development and application of real-time PCR assays for quantification of erm genes conferring resistance to macrolide-lincosamides-streptogramin B in livestock manure and manure management systems. Applied and Environmental Microbiology, 73 (14), 4407-4416. doi: 10.1128/AEM.02799-06

Firkins, J.L., Yu, Z. and Morrison, M. (2007). Ruminal nitrogen metabolism: perspectives for integration of microbiology and nutrition for dairy. Journal of Dairy Science, 90: E1-16. (13 electronic suppl. 1), E1-E16. doi: 10.3168/jds.2006-518

Rismani-Yazdi, Hamid, Christy, Ann D., Dehority, Burk A., Morrison, Mark, Yu, Zhongtang and Tuovinen, Olli H. (2007). Electricity generation from cellulose by rumen microorganisms in microbial fuel cells. Biotechnology and Bioengineering, 97 (6), 1398-1407. doi: 10.1002/bit.21366

Kang, Seungha, Barak, Yoav, Lamed, Raphael, Bayer, Edward A. and Morrison, Mark (2006). The functional repertoire of prokaryote cellulosomes includes the serpin superfamily of serine proteinase inhibitors. Molecular Microbiology, 60 (6), 1344-1354. doi: 10.1111/j.1365-2958.2006.05182.x

Yu, Zhongtang, Yu, Marie and Morrison, Mark (2006). Improved serial analysis of V1 ribosomal sequence tags (SARST-V1) provides a rapid, comprehensive, sequence-based characterization of bacterial diversity and community composition. Environmental Microbiology, 8 (4), 603-611. doi: 10.1111/j.1462-2920.2005.00933.x

Yu, Zhongtang, Michel, Frederick C., Hansen, Glenn, Wittum, Thomas and Morrison, Mark (2005). Development and application of real-time PCR assays for quantification of genes encoding tetracycline resistance. Applied and Environmental Microbiology, 71 (11), 6926-6933. doi: 10.1128/AEM.71.11.6926-6933.2005

Qi, Meng, Nelson, Karen E., Daugherty, Sean C., Nelson, William C., Hance, Ioana R., Morrison, Mark and Forsberg, Cecil W. (2005). Novel molecular features of the fibrolytic intestinal bacterium fibrobacter intestinalis not shared with fibrobacter succinogenes as determined by suppressive subtractive hybridization. Journal of Bacteriology, 187 (11), 3739-3751. doi: 10.1128/JB.187.11.3739-3751.2005

Rakotoarivonina, Harivony, Larson, Marilynn A., Morrison, Mark, Girardeau, Jean-Pierre, Gaillard-Martinie, Brigitte, Forano, Evelyne and Mosoni, Pascale (2005). The Ruminococcus albus pilA1–pilA2 locus: Expression and putative role of two adjacent pil genes in pilus formation and bacterial adhesion to cellulose. Microbiology, 151 (4), 1291-1299. doi: 10.1099/mic.0.27735-0

Larue, Ross, Yu, Zhongtang, Parisi, Victoria A., Egan, Adrian R. and Morrison, Mark (2005). Novel microbial diversity adherent to plant biomass in the herbivore gastrointestinal tract, as revealed by ribosomal intergenic spacer analysis and rrs gene sequencing. Environmental Microbiology, 7 (4), 530-543. doi: 10.1111/j.1462-2920.2005.00721.x

Sylvester, JT, Karnati, SKR, Yu, ZT, Morrison, M and Firkins, JL (2004). Development of an assay to quantify rumen ciliate protozoal biomass in cows using real-time PCR. Journal of Nutrition, 134 (12), 3378-3384.

Xu, Qi, Morrison, Mark, Nelson, Karen E., Bayer, Edward, A., Atamna, Nof and Lamed, Raphael (2004). A novel family of carbohydrate-binding modules identified with Ruminococcus albus proteins. Febs Letters, 566 (1-3), 11-16. doi: 10.1016/j.febslet.2004.04.005

Zhongtang, Yu and Morrison, Mark (2004). Improved extraction of PCR-quality community DNA from digesta and fecal samples. BioTechniques, 36 (5), 808-812.

Antonopoulos, Dionysios A., Nelson, Karen E., Morrison, Mark and White, Bryan A. (2004). Strain specific genomic regions Of ruminococcus flavefaciens FD-1 as revealed by combinatorial random-phase genome sequencing and suppressive subtractive hybridization. Environmental Microbiology, 6 (4), 335-346. doi: 10.1111/j.1462-2920.2004.00576.x

Yu Z. and Morrison M. (2004). Comparisons of different hypervariable regions of rrs genes for use in fingerprinting of microbial communities by PCR-denaturing gradient gel electrophoresis. Applied and Environmental Microbiology, 70 (8), 4800-4806. doi: 10.1128/AEM.70.8.4800-4806.2004

Bevillard, E, Goodheart, DB, Karnati, SKR, Bayer, EA, Lamed, R, Miron, J, Nelson, KE and Morrison, M (2004). Ruminococcus albus 8 mutants defective in cellulose degradation are deficient in two processive endocellulases, Cel48A and Cel9B, both of which possess a novel modular architecture. Journal of Bacteriology, 186 (1), 136-145. doi: 10.1128/JB.186.1.136-145.2004

Wen, ZT, Peng, LS and Morrison, M (2003). The glutamine synthetase of Prevotella bryantii B(1)4 is a family III enzyme (GinN) and glutamine supports growth of mutants lacking glutamate dehydrogenase activity. Fems Microbiology Letters, 229 (1), 15-21. doi: 10.1016/S0378-1097(03)00764-X

Krause, DO, Denman, SE, Mackie, RI, Morrison, M, Rae, AL, Attwood, GT and McSweeney, CS (2003). Opportunities to improve fiber degradation in the rumen: microbiology, ecology, and genomics. Fems Microbiology Reviews, 27 (5), 663-693. doi: 10.1016/S0168-6445(03)00072-X

Karnati, SKR, Yu, Z, Sylvester, JT, Dehority, BA, Morrison, M and Firkins, JL (2003). Technical note: Specific PCR amplification of protozoal 18S rDNA sequences from DNA extracted from ruminal samples of cows. Journal of Animal Science, 81 (3), 812-815.

Reveneau C., Adams S.E., Cotta M.A. and Morrison M. (2003). Phenylacetic and Phenylpropionic Acids Do Not Affect Xylan Degradation by Ruminococcus albus. Applied and Environmental Microbiology, 69 (11), 6954-6958. doi: 10.1128/AEM.69.11.6954-6958.2003

Nart, P., Nicolson, L. and Morrison, M. (2003). No evidence for persistent entervirus infection in cattle with end-stage idiopathic dilated cardiomyopathy. Research in Veterinary Science, 75 (3), 241-244. doi: 10.1016/S0034-5288(03)00097-3

De Vaux A., Morrison M. and Hutkins R.W. (2002). Displacement of Escherichia coli O157:H7 from rumen medium containing prebiotic sugars. Applied and Environmental Microbiology, 68 (2), 519-524. doi: 10.1128/AEM.68.2.519-524.2002

Morrison, Mark D., Reid, Dorothy, Onions, David, Spibey, Norman and Nicolson, Lesley (2002). Generation of E3-deleted canine adenoviruses expressing canine parvovirus capsid by homologous recombination in bacteria. Virology, 293 (1), 26-30. doi: 10.1006/viro.2001.1262

Miron, J., Jacobovitch, J., Bayer, E. A., Lamed, R., Morrison, M. and Ben-Ghedalia, D. (2001). Subcellular distribution of glycanases and related components in Ruminococcus albus SY3 and their role in cell adhesion to cellulose. Journal of Applied Microbiology, 91 (4), 677-685. doi: 10.1046/j.1365-2672.2001.01434.x

White, B. A. and Morrison, M. (2001). Genomic and proteomic analysis of microbial function in the gastrointestinal tract of ruminants - Review. Asian-Australasian Journal of Animal Sciences, 14 (6), 880-884. doi: 10.5713/ajas.2001.880

Miron, J, Ben-Ghedalla, D and Morrison, M (2001). Invited review: Adhesion mechanisms of rumen cellulolytic bacteria. Journal of Dairy Science, 84 (6), 1294-1309. doi: 10.3168/jds.S0022-0302(01)70159-2

Morrison, M and Miron, J (2000). Adhesion to cellulose by Ruminococcus albus: a combination of cellulosomes and Pil-proteins?. Fems Microbiology Letters, 185 (2), 109-115. doi: 10.1016/S0378-1097(00)00040-9

Heng, NCK, Bateup, JM, Loach, DM, Wu, XY, Jenkinson, HF, Morrison, M and Tannock, GW (1999). Influence of different functional elements of plasmid pGT232 on maintenance of recombinant plasmids in Lactobacillus reuteri populations in vitro and in vivo. Applied and Environmental Microbiology, 65 (12), 5378-5385.

Pegden, R. S., Larson, M. A., Grant, R. J. and Morrison, M. (1998). Adherence of the gram-positive bacterium Ruminococcus albus to cellulose and identification of a novel form of cellulose-binding protein which belongs to the Pil family of proteins. Journal of Bacteriology, 180 (22), 5921-5927.

Abel-Caines, SF, Grant, RJ and Morrison, M (1998). Effect of soybean hulls, soy lecithin, and soapstock mixtures on ruminal fermentation and milk composition in dairy cows. Journal of Dairy Science, 81 (2), 462-470. doi: 10.3168/jds.S0022-0302(98)75598-5

Wen, ZZ and Morrison, M (1997). Glutamate dehydrogenase activity profiles for type strains of ruminal Prevotella spp.. Applied and Environmental Microbiology, 63 (8), 3314-3317.

Madeira, HMF and Morrison, M (1997). Growth inhibition of Prevotella ruminicola by protamine. Fems Microbiology Letters, 150 (1), 81-88. doi: 10.1016/S0378-1097(97)00100-6

Madeira, HMF, Peng, L and Morrison, M (1997). Biochemical and mutational analysis of a gingipain-like peptidase activity from Prevotella ruminicola B-1(4) and its role in ammonia production by ruminal bacteria. Applied and Environmental Microbiology, 63 (2), 670-675.

Baggio, L. and Morrison, M. (1996). The NAD(P)H-utilizing glutamate dehydrogenase of Bacteroides thetaiotamicron belongs to enzyme family I, and its activity is affected by trans-acting gene(s) positioned downstream of gdhA. Journal of Bacteriology, 178 (24), 7212-7220. doi: 10.1128/jb.178.24.7212-7220.1996

Wen, ZZ and Morrison, M (1996). The NAD(P)H-dependent glutamate dehydrogenase activities of Prevotella ruminicola B(1)4 can be attributed to one enzyme (GdhA), and gdhA expression is regulated in response to the nitrogen source available for growth. Applied and Environmental Microbiology, 62 (10), 3826-3833.

Fron, M, Madeira, H, Richards, C and Morrison, M (1996). The impact of feeding condensed distillers byproducts on rumen microbiology and metabolism. Animal Feed Science and Technology, 61 (1-4), 235-245. doi: 10.1016/0377-8401(95)00943-4

Morrison, M (1996). Do ruminal bacteria exchange genetic material?. Journal of Dairy Science, 79 (8), 1476-1486. doi: 10.3168/jds.S0022-0302(96)76507-4

Morrison, M and Mackie, RI (1996). Nitrogen metabolism by ruminal microorganisms: Current understanding and future perspectives. Australian Journal of Agricultural Research, 47 (2), 227-246. doi: 10.1071/AR9960227

Morrison, M, Mackie, RI and White, BA (1994). The Restriction-Endonuclease Rflfii, Isolated From Ruminococcus-Flavefaciens Fd-1, Recognizes the Sequence 5'-Agtact-3', and Is Inhibited by Site-Specific Adenine Methylation. Fems Microbiology Letters, 122 (1-2), 181-185. doi: 10.1111/j.1574-6968.1994.tb07162.x

Morrison, M, Boniface, AN and Murray, RM (1994). Alteration of Supplement Nitrogen-Sulfur Ratio by Increasing Sulfate Supplementation Affects the Rate Rather Than the Extent of Fiber Degradation in Cattle Fed a Matured Tropical Grass Hay. Journal of the Science of Food and Agriculture, 65 (4), 449-455. doi: 10.1002/jsfa.2740650413

Morrison, M, Mackie, RI and White, BA (1992). Partial-Purification and Characterization of Ral8I, a Class-Iis Restriction Endonuclease From Ruminococcus-Albus-8 Which Recognizes 5'-Ggatc. Gene, 111 (1), 105-108. doi: 10.1016/0378-1119(92)90609-S

Morrison, M, Mackie, RI and White, BA (1992). Partial Characterization of a Dna Restriction Endonuclease From Ruminococcus-Flavefaciens Fd-1 and its Inhibition by Site-Specific Adenine Methylation. Applied and Environmental Microbiology, 58 (1), 66-69.

Morrison, M., Mackie, R. I. and Kistner, A. (1991). Erratum: Evidence that cellulolysis by an anaerobic ruminal fungus is catabolite regulated by glucose, cellobiose, and soluble starch (Appl. Environ. Microbiol. (Vol. 56), No. 10, (p.3227)). Applied and Environmental Microbiology, 57 (1)

MORRISON, M (1991). CORRECTION. Applied and Environmental Microbiology, 57 (1), 331-331.

Morrison, M, Mackie, RI and Kistner, A (1990). Evidence That Cellulolysis by An Anaerobic Ruminal Fungus Is Catabolite Regulated by Glucose, Cellobiose, and Soluble Starch. Applied and Environmental Microbiology, 56 (10), 3227-3229. doi: 10.1128/AEM.56.10.3227-3229.1990

Morrison, M, Mackie, RI and Kistner, A (1990). 3-Phenylpropanoic Acid Improves the Affinity of Ruminococcus-Albus for Cellulose in Continuous Culture. Applied and Environmental Microbiology, 56 (10), 3220-3222. doi: 10.1128/AEM.56.10.3220-3222.1990

Morrison, M, Murray, RM and Boniface, AN (1990). Nutrient Metabolism and Rumen Microorganisms in Sheep Fed a Poor-Quality Tropical Grass Hay Supplemented with Sulfate. Journal of Agricultural Science, 115 (02), 269-275. doi: 10.1017/S0021859600075237

Ledger, Emma, Smith, Daniel, Teh, Jing Jie, Wood, Michelle, Whibley, Page, Morrison, Mark, Goldberg, Joanna, Reid, David and Wells, Timothy (2024). Does a leopard change its spots? Pseudomonas aeruginosa in cystic fibrosis after CFTR modulation. Abstracts of the 15th Australasian Cystic Fibrosis Conference, Brisbane, QLD, Australia, 2–4 August 2024. Richmond, VIC, Australia: John Wiley & Sons.

Zheng, Jiaying, Sun, Qianru, Zhang, Mengjing, Liu, Chengyu, Su, Qi, Zhang, Lin, Xu, Zhi Lu, Ching, Jessica Y., Tang, Whitney, Cheung, Chun Pan, Hamilton, Amy L., Brien, Amy Wilson O’, Tun, Hein M., Morrison, Mark, Kamm, Michael A., Chan, Francis K., Zhang, Jingwan and Ng, Siew C. (2024). Faecal Microbiome As Targeted Non-invasive Biomarkers For Inflammatory Bowel Disease: A Cross-population Metagenomic Analysis In Six Cohorts. Digestive Disease Week (DDW) 2024, Chicago, IL United States, 18-21 May 2024. Philadelphia, PA United States: Elsevier. doi: 10.1016/s0016-5085(24)00517-1

Schooth, Lauren F., Kang, Seungha, Fairlie, Thomas, Lim, Yenkai, Teh, Jing Jie, Hoedt, Emily C., Keely, Simon, Shah, Ayesha, Holtmann, Gerald J. and Morrison, Mark (2024). The Duodenal Mucosa-associated Microbiota Of Patients With A Disorder Of Gut-brain Interaction Can Be Differentiated By Rome IV Criteria. Digestive Disease Week (DDW) 2024, Chicago, IL United States, 18-21 May 2024. Philadelphia, PA United States: Elsevier. doi: 10.1016/s0016-5085(24)02266-2

Zhang, Jingwan, Zheng, Jiaying, Sun, Qianru, Teh, Jing Jie, Kang, Seungha, Hamilton, Amy L., Brien, Amy Wilson O’, Ching, Jessica Y., Sun, Yang, Miao, Yinglei, Sung, Joseph J.Y., Yu, Jun, Morrison, Mark, Kamm, Michael A. and Ng, Siew C. (2024). Metagenomic Analysis Of Intra-household Transmission Patterns Of The Gut Microbiome In Crohn's Disease Across Populations. Digestive Disease Week (DDW) 2024, Chicago, IL United States, 18-21 May 2024. Philadelphia, PA United States: Elsevier. doi: 10.1016/s0016-5085(24)00569-9

Burns, Grace L., Wark, Jasmine A., Hoedt, Emily C., Minahan, Kyra, Sherwin, Simonne, Bruce, Jessica K., Lim, Yenkai, Teh, Jing Jie, Jamaluddin, M. Fairuz, Soh, Wai Sinn, Caban, Shandelle, Almazi, Juhura, Woldu, Ameha S., Dun, Matthew D., Potter, Michael D., Shanahan, Erin R., Holtmann, Gerald J., Walker, Marjorie M., Morrison, Mark, Talley, Nicholas J. and Keely, Simon (2024). A Novel Isolate Of Streptococcus Salivarius, AGIRA0003, Disrupts Tight Junctions Ex Vivo In Functional Dyspepsia. Digestive Disease Week (DDW) 2024, Chicago, IL United States, 18-21 May 2024. Philadelphia, PA United States: Elsevier. doi: 10.1016/s0016-5085(24)02260-1

Teh, Jing Jie, Kang, Seungha, Leonard, Alarna, Zhang, Jingwan, Zheng, Jiaying, Hu, Jielun, Hamilton, Amy L., Wilson-O'Brien, Amy, Trakman, Gina L., Stanley, Annalise, Ching, Jessica Y., Lin, Winnie Y., Sung, Joseph J.Y., Yu, Jun, Ng, Siew C., Kamm, Michael A. and Morrison, Mark (2024). The Key Anti-inflammatory Bacterium Faecalibacterium Prausnitzii Is More Complex And Diverse Than Previously Recognised: Anatomic, Geographic, And Genomic Differences In The East And West And In Health And Crohn's Disease. The ENIGMA Study. Digestive Disease Week (DDW) 2024, Chicago, IL United States, 18-21 May 2024. Philadelphia, PA United States: Elsevier. doi: 10.1016/s0016-5085(24)01742-6

Fairlie, Thomas, Shah, Ayesha, Lim, Yenkai, Teh, Jing Jie, Schooth, Lauren F., Morrison, Mark and Holtmann, Gerald J. (2024). Simethicone Suppresses The Growth Of Microbes Cultured From The Human Duodenal Mucosa. Digestive Disease Week (DDW) 2024, Chicago, IL United States, 18-21 May 2024. Philadelphia, PA United States: Elsevier. doi: 10.1016/s0016-5085(24)02466-1

Hu, Jielun, Zhang, Jingwan, Ruan, Yanjiao, Trakman, Gina L., Hamilton, Amy L., Lin, Winnie Y., Sun, Yang, Ching, Jessica Y., Teh, Jing Jie, Kang, Seungha, O’Brien, Amy Wilson, Stanley, Annalise, Sung, Joseph J.Y., Yu, Jun, Miao, Yinglei, Morrison, Mark, Kamm, Michael A. and Ng, Siew C. (2024). Quantifying Artificial Sweeteners And Emulsifiers In Crohn's Disease And Their Relationship With Disease With Disease Activity. The ENIGMA Study. Digestive Disease Week (DDW) 2024, Chicago, IL United States, 18-21 May 2024. Philadelphia, PA United States: Elsevier. doi: 10.1016/s0016-5085(24)03360-2

Zhang, Jingwan, Sun, Qianru, Hao, Fangjia, Teh, Jing Jie, Kang, Seungha, Hamilton, Amy L., O'Brien, Amy Wilson, Ching, Jessica Y., Sun, Yang, Miao, Yinglei, Sung, Joseph J.Y., Yu, Jun, Morrison, Mark, Kamm, Michael A. and Ng, Siew C. (2024). The Role Of Proteus Mirabilis And Its Derived Metabolite Cadaverine In Altering Bacterial Composition And Metabolite Profile In Crohn's Disease. Digestive Disease Week (DDW) 2024, Chicago, IL United States, 18-21 May 2024. Philadelphia, PA United States: Elsevier. doi: 10.1016/s0016-5085(24)01743-8

Teh, Jing Jie, Kang, Seungha, Zhang, Jingwan, Hu, Jielun, Zheng, Jiaying, Hamilton, Amy L., Wilson-O'Brien, Amy, Trakman, Gina L., Stanley, Annalise, Ching, Jessica Y., Lin, Winnie Y., Sung, Joseph JY, Yu, Jun, Ng, Siew C., Kamm, Michael A. and Morrison, Mark (2024). Crohn's Disease Mucosal Microbiota Virulence Factor Gene Analysis Identifies Antibiotic Resistant Enterococcus Faecalis Linked To Immune Activation. The ENIGMA Study. Digestive Disease Week (DDW) 2024, Chicago, IL United States, 18-21 May 2024. Philadelphia, PA United States: Elsevier. doi: 10.1016/s0016-5085(24)01741-4

Shah, Ayesha, Spannenburg, Liam, Thite, Parag, Fairlie, Thomas, Koloski, Natasha A., Morrison, Mark, Jones, Michael P. and Holtmann, Gerald J. (2024). Small Intestinal Bacterial Overgrowth In Chronic Liver Disease: An Updated Systematic Review And Meta-analysis Of Case-control Studies. Digestive Disease Week (DDW) 2024, Chicago, IL United States, 18-21 May 2024. Philadelphia, PA United States: Elsevier. doi: 10.1016/s0016-5085(24)02706-9

Fairlie, Thomas, Shah, Ayesha, Martin, Neal, Jones, Michael P., Koloski, Natasha A., Morrison, Mark and Holtmann, Gerald J. (2024). Small Intestinal Bacterial Overgrowth In Intestinal Failure: A Systematic Review And Meta-analysis. Digestive Disease Week (DDW) 2024, Chicago, IL United States, 18-21 May 2024. Philadelphia, PA United States: Elsevier. doi: 10.1016/s0016-5085(24)02701-x

Spannenburg, L., Shah, A., Thite, P., Fairlie, T., Moniruzzaman, M., Stuart, K. A., Koloski, N. A., Morrison, M., Jones, M. P. and Holtmann, G. J. (2023). Small intestinal bacterial overgrowth in chronic liver disease: a systematic review and meta-analysis of case-control studies. 31st United European Gastroenterology Week 2023, Copenhagen, Denmark, 14-17 October 2023. Oxford, United Kingdom: John Wiley & Sons. doi: 10.1002/ueg2.1246

Ma, X., Shah, A., Fairlie, T., Martin, N., Jones, M., Koloski, N., Morrison, M. and Holtmann, G. (2023). Small intestinal bacterial overgrowth in patients with intestinal failure: A systematic review and meta-analysis. Gastroenterological Society of Australia (GESA) Australian Gastroenterology Week (AGW) 2023, Brisbane, QLD Australia, 2-5 September 2023. Richmond, VIC Australia: John Wiley & Sons.

Spannenburg, L., Shah, A., Thite, P., Fairlie, T., Koloski, N., Moniruzzaman, M., Morrison, M., Jones, M. and Holtmann, G. (2023). Small intestinal bacterial overgrowth in chronic liver disease: A systematic review and meta-analysis of case-control studies. Gastroenterological Society of Australia (GESA) Australian Gastroenterology Week (AGW) 2023, Brisbane, QLD Australia, 2-5 September 2023. Richmond, VIC Australia: John Wiley & Sons.

Wark, Jasmine A., Burns, Grace L., Hoedt, Emily C., Dowling, Laura R., Soh, Wai Sinn, Sherwin, Simonne, Gottstein, Mia, Budden, Kurtis F., Kaiko, Gerard, Morrison, Mark, Keely, Simon and Talley, Nicholas J. (2023). A NOVEL DUODENAL ISOLATE OF STREPTOCOCCUS SALIVARIUS MAY CONTRIBUTE TO HOMEOSTATIC IMBALANCE AND BREACH THE DUODENAL EPITHELIAL BARRIER IN FUNCTIONAL DYSPEPSIA. Digestive Disease Week (DDW), Chicago Il, May 06-09, 2023. PHILADELPHIA: W B SAUNDERS CO-ELSEVIER INC.

Teh, Jing Jie, Kang, Seungha, Zhang, Jingwan, Hu, Jielun, Hamilton, Amy L., Wilson-O'Brien, Amy, Trakman, Gina L., Lin, Winnie Y., Ching, Jessica Y., Sung, Joseph J. Y., Yu, Jun, Ng, Siew C., Kamm, Michael A. and Morrison, Mark (2023). THE SECRETOMES OF COLONIC MUCOSA-ASSOCIATED MICROBIOTA IN CROHN'S DISEASE AND HEALTH IDENTIFY KEY BACTERIA DRIVING PRO- AND ANTI-INFLAMMATORY RESPONSES. THE ENIGMA STUDY. Digestive Disease Week (DDW), Chicago Il, May 06-09, 2023. PHILADELPHIA: W B SAUNDERS CO-ELSEVIER INC.

Zhang, Jingwan, Sun, Qianru, Teh, Jing Jie, Kang, Seungha, Hu, Jielun, Lin, Winnie Y., Trakman, Gina L., Sun, Yang, Hamilton, Amy L., Brien, Amy Wilson O', Ching, Jessica Y., Miao, Yinglei, Sung, Joseph J. Y., Yu, Jun, Morrison, Mark, Kamm, Michael A. and Ng, Siew C. (2023). IMPACT OF EPIDEMIOLOGIC EVOLUTION, DIET AND EARLY LIFE PROCESSED FOOD INTAKE ON MICROBIOME VARIANCE IN CROHN'S DISEASE. THE INTERNATIONAL ENIGMA STUDY. Digestive Disease Week (DDW), Chicago Il, May 06-09, 2023. PHILADELPHIA: W B SAUNDERS CO-ELSEVIER INC.

Sun, Qianru, Zhu, Wenyi, Lin, Winnie Y., Trakman, Gina L., Ching, Jessica Y., Hamilton, Amy L., O' Brien, Amy Wilson, Morrison, Mark, Kamm, Michael A., Chan, Francis K., Zhang, Jingwan and Ng, Siew C. (2023). POLYSORBATE-80 EXACERBATES PROTEUS MIRABILIS-INDUCED INTESTINAL INFLAMMATION VIA STIMULATION OF ENZYME X SECRETION. THE ENIGMA STUDY. Digestive Disease Week (DDW), Chicago Il, May 06-09, 2023. PHILADELPHIA: W B SAUNDERS CO-ELSEVIER INC.

Teh, Jing Jie, Kang, Seungha, Leonard, Alarna, Zhang, Jingwan, Hu, Jielun, Hamilton, Amy L., Wilson-O'Brien, Amy, Trakman, Gina L., Lin, Winnie Y., Ching, Jessica Y., Sung, Joseph Jy, Yu, Jun, Ng, Siew C., Kamm, Michael A. and Morrison, Mark (2023). CHARACTERIZATION OF THE KEY ANTI-INFLAMMATORY BACTERIUM FAECALIBACTERIUM PRAUSNITZII INTERNATIONALLY IN HEALTH AND CROHN'S DISEASE. THE ENIGMA STUDY. Digestive Disease Week (DDW), Chicago Il, May 06-09, 2023. PHILADELPHIA: W B SAUNDERS CO-ELSEVIER INC.

Kang, Seungha, Teh, Jing Jie, Zhang, Jingwan, Hu, Jielun, Hamilton, Amy L., Wilson-O'Brien, Amy, Trakman, Gina L., Lin, Winnie Y., Ching, Jessica Y., Sung, Joseph J. Y., Yu, Jun, Ng, Siew C., Kamm, Michael A. and Morrison, Mark (2023). CHARACTERIZATION OF THE COLONIC MUCOSA-ASSOCIATED METAGENOME REVEALS NOVEL MICROBES AND GEOGRAPHICALLY DISTINCT COMMUNITIES IN HEALTH AND CROHN'S DISEASE. THE ENIGMA STUDY. Digestive Disease Week (DDW), Chicago Il, May 06-09, 2023. PHILADELPHIA: W B SAUNDERS CO-ELSEVIER INC.

Teh, Jing Jie, Kang, Seungha, Zhang, Jingwan, Hu, Jielun, Hamilton, Amy L., Wilson-O'Brien, Amy, Trakman, Gina L., Lin, Winnie Y., Ching, Jessica Y., Sung, Joseph JY, Yu, Jun, Ng, Siew C., Kamm, Michael A. and Morrison, Mark (2023). The Secretomes Of Colonic Mucosa-associated Microbiota In Crohn's Disease And Health Identify Key Bacteria Driving Pro- And Anti-inflammatory Responses. The Enigma Study. Digestive Disease Week (DDW) 2023, Chicago, IL United States, 6-9 May 2023. Philadelphia, PA United States: Elsevier. doi: 10.1016/s0016-5085(23)03117-7

Zhang, Jingwan, Sun, Qianru, Teh, Jing Jie, Kang, Seungha, Hu, Jielun, Lin, Winnie Y., Trakman, Gina L., Sun, Yang, Hamilton, Amy L., Wilson O’Brien, Amy, Ching, Jessica Y., Miao, Yinglei, Sung, Joseph JY, Yu, Jun, Morrison, Mark, Kamm, Michael A. and Ng, Siew C. (2023). Impact Of Epidemiologic Evolution, Diet And Early Life Processed Food Intake On Microbiome Variance In Crohn's Disease. The International Enigma Study. Digestive Disease Week (DDW) 2023, Chicago, IL United States, 6-9 May 2023. Philadelphia, PA United States: Elsevier. doi: 10.1016/s0016-5085(23)01261-1

Kang, Seungha, Teh, Jing Jie, Zhang, Jingwan, Hu, Jielun, Hamilton, Amy L., Wilson-O'Brien, Amy, Trakman, Gina L., Lin, Winnie Y., Ching, Jessica Y., Sung, Joseph JY, Yu, Jun, Ng, Siew C., Kamm, Michael A. and Morrison, Mark (2023). Characterization Of The Colonic Mucosa-associated Metagenome Reveals Novel Microbes And Geographically Distinct Communities In Health And Crohn's Disease. The Enigma Study. Digestive Disease Week (DDW) 2023, Chicago, IL United States, 6-9 May 2023. Philadelphia, PA United States: Elsevier. doi: 10.1016/s0016-5085(23)03125-6

Wark, Jasmine A., Burns, Grace L., Hoedt, Emily C., Dowling, Laura R., Soh, Wai Sinn, Sherwin, Simonne, Gottstein, Mia, Budden, Kurtis F., Kaiko, Gerard, Morrison, Mark, Keely, Simon and Talley, Nicholas J. (2023). A Novel Duodenal Isolate Of Streptococcus Salivarius May Contribute To Homeostatic Imbalance And Breach The Duodenal Epithelial Barrier In Functional Dyspepsia. Digestive Disease Week (DDW) 2023, Chicago, IL United States, 6-9 May 2023. Philadelphia, PA United States: Elsevier. doi: 10.1016/s0016-5085(23)02993-1

Shah, Ayesha, Sternes, Peter R., Kang, Seungha, Pintos, Camila Ayala, Fairlie, Thomas, Tyson, Gene W., Morrison, Mark and Holtmann, Gerald J. (2023). Density Of The Mucosal Bacterial Colonization Along The Gastrointestinal Tract In Health And Disease. Digestive Disease Week (DDW) 2023, Chicago, IL United States, 6-9 May 2023. Philadelphia, PA United States: Elsevier. doi: 10.1016/s0016-5085(23)03108-6

Shah, Ayesha, Kang, Seungha, Fairlie, Thomas, Morrison, Mark and Holtmann, Gerald J. (2023). Variations Of The Mucosa Associated Microbiome In Patients With Primary Sclerosing Cholangitis, Ulcerative Colitis And Asymptomatic Controls Along The Gastrointestinal Tract. Digestive Disease Week (DDW) 2023, Chicago, IL United States, 6-9 May 2023. Philadelphia, PA United States: Elsevier. doi: 10.1016/s0016-5085(23)01543-3

Teh, Jing Jie, Kang, Seungha, Leonard, Alarna, Zhang, Jingwan, Hu, Jielun, Hamilton, Amy L., Wilson-O'Brien, Amy, Trakman, Gina L., Lin, Winnie Y., Ching, Jessica Y., Sung, Joseph JY, Yu, Jun, Ng, Siew C., Kamm, Michael A. and Morrison, Mark (2023). Characterization Of The Key Anti-inflammatory Bacterium Faecalibacterium Prausnitzii Internationally In Health And Crohn's Disease. The Enigma Study. Digestive Disease Week (DDW) 2023, Chicago, IL United States, 6-9 May 2023. Philadelphia, PA United States: Elsevier. doi: 10.1016/s0016-5085(23)03121-9

Shah, Ayesha, Kang, Seungha, Fairlie, Thomas, Morrison, Mark and Holtmann, Gerald J. (2023). Variations of the mucosa associated microbiome in patients with primary sclerosing cholangitis, ulcerative colitis and asymptomatic controls along the gastrointestinal tract. Digestive Disease Week (DDW), Chicago, IL, United States, 6-9 May 2023. Philadelphia, PA, United States: Elsevier. doi: 10.1016/S0016-5085(23)01543-3

Shah, Ayesha, Sternes, Peter R., Kang, Seungha, Pintos, Camila Ayala, Fairlie, Thomas, Tyson, Gene W., Morrison, Mark and Holtmann, Gerald J. (2023). Density of the mucosal bacterial colonization along the gastrointestinal tract in health and disease. Digestive Disease Week (DDW), Chicago, IL, United States, 6-9 May 2023. Philadelphia, PA, United States: Elsevier. doi: 10.1016/S0016-5085(23)03108-6

Sun, Qianru, Zhu, Wenyi, Lin, Winnie Y., Trakman, Gina L., Ching, Jessica Y., Hamilton, Amy L., O’Brien, Amy Wilson, Morrison, Mark, Kamm, Michael A., Chan, Francis K., Zhang, Jingwan and Ng, Siew C. (2023). Polysorbate-80 Exacerbates Proteus Mirabilis-induced Intestinal Inflammation Via Stimulation Of Enzyme X Secretion. The Enigma Study. Digestive Disease Week (DDW) 2023, Chicago, IL United States, 6-9 May 2023. Philadelphia, PA United States: Elsevier. doi: 10.1016/s0016-5085(23)01072-7

Bergot, Anne-Sophie, Cai, Benjamin, Giri, Rabina, Cameron, Amy, Duggan, Emily, Lim, Kai, Rehaume, Linda, Morrison, Mark, Begun, Jakob and Thomas, Ranjeny (2023). The interplay of IL-23, probiotic and pathobiont bacteria in the pathogenesis of ileitis and spondyloarthritis in the SKG mouse model. 2023 Australian Rheumatology Association (ARA) 63rd Annual Scientific Meeting, Hobart, TAS, Australia, 6–9 May 2023. Hoboken, NJ, United States: Wiley.

Teh, J. J., Kang, S., Zhang, J., Hu, J., Hamilton, A. L., Wilson-O'Brien, A., Trakman, G. L., Lin, W., Ching, J., Sung, J. J. Y., Yu, J., Ng, S. C., Kamm, M. A. and Morrison, M. (2023). Deep functional assessment of the colonic mucosa-associated microbiota in Crohn's disease and health identifies pro- and anti- inflammatory secretomes and associated bacterial consortia. The ENIGMA study. 18th Congress of ECCO, Copenhagen, Denmark, 1-4 March 2023. Oxford, United Kingdom: Oxford University Press. doi: 10.1093/ecco-jcc/jjac190.1055

Teh, J. J., Kang, S., Leonard, A., Zhang, J., Hu, J., Hamilton, A. L., Wilson-O'Brien, A., Trakman, G. L., Lin, W., Ching, J., Sung, J. J. Y., Yu, J., Ng, S. C., Kamm, M. A. and Morrison, M. (2023). Key anti-inflammatory Faecalibacterium prausnitzii is heterogeneous and diverse in the East and West and in health and Crohn’s disease. The ENIGMA study. 18th Congress of ECCO, Copenhagen, Denmark, 1-4 March 2023. Oxford, United Kingdom: Oxford University Press. doi: 10.1093/ecco-jcc/jjac190.0088

Kang, S., Teh, J. J., Zhang, J., Hu, J., Hamilton, A. L., Wilson-O'Brien, A., Trakman, G. L., Lin, W., Ching, J., Sung, J. J. Y., Yu, J., Ng, S. C., Kamm, M. A. and Morrison, M. (2023). Metagenomic characterisation of the colonic mucosa-associated microbiota reveals novel microbes and communities in health and Crohn’s disease. The ENIGMA study. 18th Congress of ECCO, Copenhagen, Denmark, 1-4 March 2023. Oxford, United Kingdom: Oxford University Press. doi: 10.1093/ecco-jcc/jjac190.0089

Kang, S., Teh, J. J., Schooth, L., Zhang, J., Hu, J., Hamilton, A. L., Wilson-O'Brien, A., Ching, J. Y. L., Lin, W., Trakman, G. L., Sung, J., Yu, J., Ng, S. C., Kamm, M. A. and Morrison, M. (2022). The food additive carrageenan has differential effects on the growth of the mucosa-associated microbiota from Asian and Western people with Crohn's disease and healthy controls: The ENIGMA study. Gastroenterological Society of Australia (GESA) Australian Gastroenterology Week (AGW) 2022, Sydney, NSW Australia, 9–11 September 2022. Richmond, VIC Australia: John Wiley & Sons.

Hu, J., Ruan, Y., Lin, W., Trakman, G., Zhang, J., Teh, J. J., Kang, S., Hamilton, A., Wilson-O'Brien, A., Ching, J. Y. L., Sung, J. J. Y., Yu, J., Morrison, M., Kamm, M. A. and Ng, S. C. (2022). Elevated artificial sweetener levels are associated with Crohn's disease: The ENIGMA study. Gastroenterological Society of Australia (GESA) Australian Gastroenterology Week (AGW) 2022, Sydney, NSW Australia, 9–11 September 2022. Richmond, VIC Australia: John Wiley & Sons.

Teh, J. J., Kang, S., Zhang, J., Hu, J., Hamilton, A., Wilson-O'Brien, A., Ching, J. Y. L., Lin, W., Trakman, G., Sung, J., Jun, Y., Ng, S., Kamm, M. and Morrison, M. (2022). Deep metagenomic sequencing of the colonic mucosa-associated microbiota shows novel microbes and transnational differences in health and Crohn's disease: The ENIGMA study. Gastroenterological Society of Australia (GESA) Australian Gastroenterology Week (AGW) 2022, Sydney, NSW Australia, 9–11 September 2022. Richmond, VIC Australia: John Wiley & Sons.

Schooth, L., Sid-Ahmed, A., Kang, S., Lim, Y., Fairlie, T., Shah, A., Holtmann, G. and Morrison, M. (2022). Diversity of Veillonella in cultures of the duodenal mucosa-associated microbiota suggests species-level differences between people with and without functional gastrointestinal symptoms. Gastroenterological Society of Australia (GESA) Australian Gastroenterology Week (AGW) 2022, Sydney, NSW Australia, 9–11 September 2022. Richmond, VIC Australia: John Wiley & Sons.

Shah, Ayesha, Sternes, Peter R., Pintos, Camila Ayala, Kang, Seungha, Jones, Michael P., Tyson, Gene, Morrison, Mark and Holtmann, Gerald J. (2022). Influence of proton pump inhibitors on the mucosa associated microbiome in the small intestine and colon. American Gastroenterological Association Conference 2022, Chicago, IL United States, 6-9 May 2022. Philadelphia, PA United States: Elsevier. doi: 10.1016/s0016-5085(22)62401-6

Zhang, Jingwan, Sun, Qianru, Teh, Jing Jie, Kang, Seungha, Hu, Jielun, Lin, Winnie Y., Trakman, Gina L., Hamilton, Amy L., Brien, Amy Wilson O’, Ching, Jessica Y., Sung, Joseph JY, Yu, Jun, Morrison, Mark, Kamm, Michael A. and Ng, Siew C. (2022). Food additives intake is associated with microbiome dysbiosis and specific pro-inflammatory bacterial changes in Crohn's disease. The ENIGMA study. American Gastroenterological Association Conference 2022, Chicago, IL United States, 6-9 May 2022. Philadelphia, PA United States: Elsevier. doi: 10.1016/s0016-5085(22)60218-x

Drljaca, Sonja, Vollenbroich, Valeria, Teh, Jing Jie, Kang, Seungha, Zhang, Jingwan, Hu, Jielun, Hamilton, Amy L., Wilson-O'Brien, Amy, Ching, Jessica Y., Lin, Winnie Y., Trakman, Gina L., Sung, Joseph, Yu, Jun, Ng, Siew C., Kamm, Michael A. and Morrison, Mark (2022). Deep characterization of the mucosa-associated microbiota in asian and western populations reveals acidaminococcus occupies a key niche in the nitrogen economy of Crohn's disease. The ENIGMA study. American Gastroenterological Association Conference 2022, Chicago, IL United States, 6-9 May 2022. Philadelphia, PA United States: Elsevier. doi: 10.1016/s0016-5085(22)60319-6

Teh, Jing Jie, Kang, Seungha, Zhang, Jingwan, Hu, Jielun, Hamilton, Amy L., Wilson-O'Brien, Amy, Ching, Jessica Y., Lin, Winnie Y., Trakman, Gina L., Sung, Joseph, Yu, Jun, Ng, Siew C., Kamm, Michael A. and Morrison, Mark (2022). Strain-level resolution of the colonic mucosa-associated microbiota reveals novel trans-ethnic differences in health and Crohn's disease. The ENIGMA study. American Gastroenterological Association Conference 2022, Chicago, IL United States, 6-9 May 2022. Philadelphia, PA United States: Elsevier. doi: 10.1016/s0016-5085(22)62327-8

Schooth, Lauren F., Ahmed, Ahmed Sid, Kang, Seungha, Shah, Ayesha, Fairlie, Thomas, Teh, Jing Jie, Lim, Yenkai, Hoedt, Emily C., Talley, Nicholas J., Keely, Simon, Holtmann, Gerald J. and Morrison, Mark (2022). Strain-level functional and phenotypic resolution of the duodenal mucosa-associated microbiota in functional dyspepsia and healthy control subjects via a novel ex vivo combination of microbe culture and metagenomic sequencing. American Gastroenterological Association Conference 2022, Chicago, IL United States, 6-9 May 2022. Philadelphia, PA United States: Elsevier. doi: 10.1016/s0016-5085(22)61208-3

Schooth, L., Kang, S., Lim, Y., Shah, A., Fairlie, T., Jimenez-Loayza, J., Teh, J.-J., Holtmann, G. and Morrison, M. (2021). Differentiation and capture of the human duodenal mucosa-associated microbiota by a novel ex vivo combination of microbe culture and metagenomic sequencing. GESA AGW 2021, Online, 4-12 September 2021. Richmond, VIC Australia: Wiley-Blackwell.

Teh, Jing Jie, Kang, Seungha, Schooth, Lauren F., Loayza, Jeimy Johana Jimenez, Zhang, Jingwan, Zhang, Fen, Liu, Qin, Hamilton, Amy L., Wilson-O'Brien, Amy, Ching, Jessica Y., Sung, Joseph J., Yu, Jun, Ng, Siew C., Kamm, Michael A. and Morrison, Mark (2021). Sa533 Novel characterization of the secretomes of crohn's disease mucosa-associated microbiota, and their modulation of inflammation through nf-κb signalling. The Enigma Study. DDW 2021, Virtual, 21-23 May 2021. Philadelphia, PA USA: Elsevier. doi: 10.1016/s0016-5085(21)01989-2

Kang, Seungha, de Klerk, Ashley, Noon, Ebony, Teh, Jing Jie, Zhang, Jingwan, Zhang, Fen, Liu, Qin, Hamilton, Amy L., Wilson-O'Brien, Amy, Trakman, Gina L., Lin, Winnie Y., Ching, Jessica Y., Sung, Joseph J., Yu, Jun, Ng, Siew C., Kamm, Michael A. and Morrison, Mark (2021). Food additives enhance pro-inflammatory bacterial growth in Crohn's disease mucosa-associated microbiota. The Enigma Study. DDW 2021, Online, 21-23 May 2021. Philadelphia, PA United States: Elsevier. doi: 10.1016/s0016-5085(21)01036-2

McFarlane, Catherine, Krishnasamy, Rathika, Stanton, Tony, Savill, Emma, Snelson, Matthew, Mihala, Gabor, Morrison, Mark, Johnson, David W. and Campbell, Katrina L. (2021). Diet quality, protein-bound uraemic toxins and gastrointestinal microbiome in chronic kidney disease. 58th Congress of the European Renal Association (ERA) European Dialysis and Transplant Association (EDTA), Online, 5-8 June 2021. Oxford, United Kingdom: Oxford University Press.

McFarlane, Catherine, Krishnasamy, Rathika, Stanton, Tony, Savill, Emma, Snelson, Matthew, Mihala, Gabor, Morrison, Mark, Johnson, David W. and Campbell, Katrina L. (2021). Diet quality, protein-bound uraemic toxins and gastrointestinal microbiome in chronic kidney disease. 58th ERA-EDTA Congress, Berlin, Germany, 5–8 June 2021. Oxford, United Kingdom: Oxford University Press. doi: 10.1093/ndt/gfab139.002

McFarlane, Catherine, Krishnasamy, Rathika, Stanton, Tony, Savill, Emma, Kelly, Jaimon T., Snelson, Matthew, Mihala, Gabor, Morrison, Mark, Johnson, David W. and Campbell, Katrina L. (2021). Health interventions in chronic kidney disease: Acceptability and feasibility of of synbiotic supplementation. 58th ERA-EDTA Congress, Berlin, Germany, 5–8 June 2021. Oxford, United Kingdom: Oxford University Press. doi: 10.1093/ndt/gfab089.003

McFarlane, Catherine, Krishnasamy, Rathika, Stanton, Tony, Savill, Emma, Kelly, Jaimon T., Snelson, Matthew, Mihala, Gabor, Morrison, Mark, Johnson, David W. and Campbell, Katrina L. (2021). Gut health interventions in chronic kidney disease: acceptability and feasibility of synbiotic supplementation. 58th ERA-EDTA Congress, Virtual, 5–8 June 2021. Oxford, United Kingdom: Oxford University Press.

Sternes, Peter, Brett, Laurel, Phipps, Julie, Ciccia, Francesco, de Guzman, Erika, Morrison, Mark, Holtmann, Gerald, Klingberg, Eva, McIvor, Carolyn, Forsblad-d'Elia, Helena and Brown, Matthew (2020). Gut Microbiome Changes Are Different Between Ankylosing Spondylitis and Inflammatory Bowel Disease, and Correlate with Disease Activity in Both Diseases. Annual Meeting of the American-College-of-Rheumatology (ACR), Electr Network, Nov 05-09, 2020. HOBOKEN: WILEY.

Bergot, Anne-Sophie, Giri, Rabina, Cameron, Amy, Duggan, Emily, Loayza, Jeimy Jimenez, Morrison, Mark, Rehaume, Linda, Begun, Jakob and Thomas, Ranjeny (2020). Curdlan-induced Villous Permeability, Luminal Pathobiont Translocation to the Ileal Crypts, Ileitis and Arthritis Are Mitigated by Clostridia in Colonised Germ-free SKG Mice. Annual Meeting of the American-College-of-Rheumatology (ACR), Electr Network, Nov 05-09, 2020. HOBOKEN: WILEY.

Teh, Jing Jie, Kang, Seungha, Murtaza, Nida, Zhang, Jingwan, Zhang, Fen, Liu, Qin, Hamilton, Amy L., Wilson-O'Brien, Amy, Ching, Jessica Y., Sung, Joseph J., Yu, Jun, Ng, Siew C., Kamm, Michael A. and Morrison, Mark (2020). Microbiota and viruence factors associated with Crohn's Disease recurrence revealed at strain-level resolution by novel combination of microbe culture and metagenomic sequencing (mc-mgs). The Enigma Study. AGA 2020, Online, 2020. Philadelphia, PA United States: Elsevier . doi: 10.1016/s0016-5085(20)33265-0

Shah, Ayesha, Talley, Nicholas J., Kang, Seungha, Do, Anh, Walker, Marjorie M., Shanahan, Erin R., Koloski, Natasha A., Jones, Michael P., Keely, Simon, Morrison, Mark and Holtmann, Gerald J. (2020). Self-reported non-celiac wheat sensitivity in patients with chronic unexplained (functional) gastrointestinal symptoms: gut function, immune activation and duodenal mucosa associated microbiome. AGA 2020, Online, 2020. Philadelphia, PA United States: Elsevier . doi: 10.1016/s0016-5085(20)31900-4

Shah, Ayesha, Talley, Nicholas J., Koloski, Natasha A., Macdonald, Graeme A., Kendall, Bradley J., Shanahan, Erin R., Walker, Marjorie M., Jones, Michael P., Morrison, Mark and Holtmann, Gerald J. (2020). Quantitative PCR as a novel approach to determine small intestinal bacterial load in health and disease. Crohn's and Colitis Congress, Austin, TX United States, 23-25 January 2020. Philadelphia, PA United States: Elsevier.

Shah, Ayesha, Talley, Nicholas, Koloski, Natasha, Shanahan, Erin, Walker, Marjorie, Keely, Simon, Jones, Michael, Morrison, Mark and Holtmann, Gerald (2020). Quantitative PCR as a novel approach to determine small intestinal bacterial load in health and disease. Meeting of the Federation of Neurogastroenterology and Motility, Adelaide, Australia, 25 – 28 March 2020. Chichester, West Sussex, United Kingdom: Wiley-Blackwell.

Giri, R., Shamsunnahar, K., Salim, A., Capon, R., Morrison, M., Cuiv, P. O. and Begun, J. (2020). Investigating the role of bioactives produced by gut bacteria to modulate immune response in inflammatory bowel disease. 15th Congress of ECCO, Vienna, Austria, 12-15 February 2020. Oxford, United Kingdom: Oxford University Press. doi: 10.1093/ecco-jcc/jjz203.035

Shah, Ayesha, Talley, Nicholas, Kang, Seungha, Do, Anh, Walker, Marjorie, Koloski, Natasha, Jones, Michael, Keely, Simon, Morrison, Mark and Holtmann, Gerald (2020). Self-reported non-celiac wheat sensitivity (NCWS) in patients with chronic unexplained (functional) gastrointestinal symptoms. Meeting of the Federation of Neurogastroenterology and Motility, Adelaide, SA Australia, 25 – 28 March 2020. Chichester, West Sussex United Kingdom: Wiley-Blackwell.

Shah, Ayesha, Kang, Seungha, Tyson, Gene, Zaugg, Julian, Hugenholtz, Phil, Morrison, Mark and Holtmann, Gerald J. (2020). Variations of the mucosa associated microbiota along the human gastrointestinal tract in health and inflammatory bowel disease. Crohn's and Colitis Congress, Austin, TX, United States, 23-25 January 2020. Philadelphia, PA United States: Elsevier. doi: 10.1016/s0016-5085(20)32052-7

Tsutsumi, Tamao, Shah, Alok, Lam, Lisa M T, Schlebusch, Sanmarie, Krueger, Annika, Frazer, Ian, Hugenholtz, Phil, Soyer, H Peter, Morrison, Mark, Hill, Michelle, Sedman, Jacqueline and Ismail, Ashraf (2019). 2125. Staphylococcus Species Identification by Fourier Transform Infrared (FTIR) Spectroscopic Techniques: A Cross-Lab Study. IDWeek 2019, Washington, DC, United States, 2-6 October 2019. Oxford, United Kingdom: Oxford University Press. doi: 10.1093/ofid/ofz360.1805

Berendsen, E. M., Hoedt, E. C., Teh, J. -J., Zhang, J., Zhang, F., Liu, Q., Hamilton, A. L., Wilson-O'Brien, A., Ching, J., Sung, J. J., Yu, J., Ng, S. C., Kamm, M. A. and Morrison, M. (2019). Characterisation of Crohn's disease mucosa-associated microbiota by a novel combination of microbe culture and metagenomic sequencing (MC-MGS): the ENIGMA study. OXFORD: OXFORD UNIV PRESS. doi: 10.1093/ecco-jcc/jjy222.976

Zhang, J., Berendsen, E., Hoedt, E., Liu, Q., Zhang, F., Xu, Z., Hamilton, A., Brien, A. W. O', Ching, J., Sung, J. J., Kamm, M. A., Morrison, M., Yu, J. and Ng, S. C. (2019). Proteus is a key candidate in the pathogenesis of Crohn's disease: mucosa, stool genomics and functional analysis: the ENIGMA study. OXFORD: OXFORD UNIV PRESS. doi: 10.1093/ecco-jcc/jjy222.958

Berendsen, E. M., Hoedt, E. C., Teh, J. -J., Zhang, J., Zhang, F., Liu, Q., Hamilton, A. L., Ching, J., Sung, J. J., Yu, J., Ng, S. C., Kamm, M. A. and Morrison, M. (2019). Urease-positive proteobacteria in Crohn's disease identified by novel ex vivo mucosal microbe culture combined with metagenomic sequencing (MC-MGS): the ENIGMA study. OXFORD: OXFORD UNIV PRESS. doi: 10.1093/ecco-jcc/jjy222.973

Loayza, J. J. Jimenez, Berendsen, E. M., Teh, J. -J., Hoedt, E. C., Zhang, J., Liu, Q., Hamilton, A. L., Wilson-O'Brien, A., Trakman, G. L., Lin, W., Tang, W., Ching, J., Or, L. M. H., Sung, J. J., Yu, J., Ng, S. C., Kamm, M. A. and Morrison, M. (2019). The common food additives sodium sulfite and polysorbate 80 have a profound inhibitory effect on the commensal, anti-inflammatory bacterium Faecalibacterium prausnitzii: the ENIGMA study. 14th Congress of ECCO, Copenhagen, Denmark, 6-9 March 2019. Oxford, United Kingdom: Oxford University Press.

Trakman, G., Lin, W. Y. Y., Wilson-O'brien, A., Ching, J., Tang, W., Orr, L., Stanley, A., Hamilton, A. L., Morrison, M., Yu, J., Sung, J. J., Ng, S. C. and Kamm, M. A. (2019). Development and validation of tools to assess food additive intake: the ENIGMA study. 14th Congress of ECCO, Copenhagen, Denmark, 6-9 March 2019. Oxford, United Kingdom: Oxford University Press. doi: 10.1093/ecco-jcc/jjy222.896

Stefia, L., Lee, J., Legrand, J., Rodero, M., Patel, J., Linedale, R., Burman, S., Morrison, M. and Khosrotehrani, K. (2019). Modulating NFkB signaling in skin wounds through pharmacological or probiotic intervention using Faecalibacterium prausnitzii extracts. 49th Annual Meeting of the European-Society-for-Dermatological-Research (ESDR), Bordeaux, France, 18-21 September 2019. New York, NY, United States: Elsevier. doi: 10.1016/j.jid.2019.07.663

Legrand, J., Muller, N., Baz, B., Morahan, G., Walker, G., Morrison, M. and Khosrotehrani, K. (2019). Skin bacterial composition is driven largely by host genetic background and polymorphisms regulating innate immunity. 49th Annual Meeting of the European-Society-for-Dermatological-Research (ESDR), Bordeaux, France, 18-21 September 2019. New York, NY United States: Elsevier. doi: 10.1016/j.jid.2019.07.631

Holtmann, Gerald, Morrison, Mark, Talley, Nicholas, Koloski, Natasha, Shah, Ayesha and Jones, Michael (2019). Factorial analysis-based assessment of the Mucosa Associated Microbiome. Asia Pacific Digestive Week, Kolkata, India, 12–15 December 2019. Hoboken, NJ United States: Wiley.

Shah, Ayesha, Burger, Daniel, Stuart, Katherine, Martin, Neal, Walker, Marjorie, Tallis, Caroline, Jones, Mike, Macdonald, Graeme, Talley, Nicholas, Morrison, Mark and Holtmann, Gerald (2018). Systematic review of the use of oral antibiotic therapy in primary sclerosing cholangitis and inflammatory bowel disease. Asian Pacific Digestive Week (APDW). Connecting Excellence on Gastroenterology and Hepatology in Asia-Pacific, Seoul, Korea, 15–18 November 2018. Richmond, VIC, Australia: Wiley-Blackwell.

Shah, Ayesha, Shanahan, Erin, Berendsen, Erwin, Macdonald, Graeme, Rich, Justin, Ghasemi, Pegah, Hansen, Teressa, Koloski, Natasha, Burger, Daniel, Keeley, Simon, Walker, Marjorie, Talley, Nicholas, Morrison, Mark and Holtmann, Gerald (2018). Quantitative PCR as a novel approach to determine influence of density of bacterial colonization on health and disease. Asian Pacific Digestive Week (APDW). Connecting Excellence on Gastroenterology and Hepatology in Asia-Pacific, Seoul, Korea, 15–18 November 2018. Richmond, VIC, Australia: Wiley-Blackwell.

Shah, Ayesha, Talley, Nicholas J., Rich, Justin, Ghasemi, Pegah, Jones, Mike, Kendall, Bradley J., Burger, Daniel, Koloski, Natasha, Walker, Marjorie, Morrison, Mark and Holtmann, Gerald (2018). Systematic review and meta-analysis: Prevalence of small intestinal bacterial overgrowth in irritable bowel syndrome. Asian Pacific Digestive Week (APDW), Seoul, Korea, 15–18 November 2018. Hoboken, NJ, United States: Wiley-Blackwell.

Wang, Zhenayi, Properzi, Catherine, Liddle, Christopher, Melton, Phillip, Ariff, Amir, O'Sullivan, Therese, Sherriff, Jill, Coulter, Sally, Christophersen, Claus, Morrison, Mark, Jeffrey, Gary P. and Adams, Leon A. (2018). Bile Acids, Hepatic Steatosis and Gut Microbiome in Patients Undergoing Dietary Intervention for Non-Alcoholic Fatty Liver Disease. Annual Meeting of the American-Association-for-the-Study-of-Liver-Diseases (AASLD) / Liver Meeting, San Francisco Ca, Nov 09-13, 2018. HOBOKEN: WILEY. doi: 10.1002/hep.30076

Mcmaster, J. J., Rich, G. G., Shanahan, E. R., Do, A. T., Fletcher, L. M., Kutyla, M. J., Tallis, C., Macdonald, G. A., Chachay, V. S., Morrison, M. and Holtmann, G. J. (2018). Perturbation of the gut-brain axis as the mechanism of action for weight reduction in patients treated with a duodenal-jejunal bypass sleeve. Gastroenterological Society of Australia (GESA) Australian Gastroenterology Week (AGW) “Gut Matters”, Brisbane, QLD Australia, 8-10 September 2018. Richmond, VIC Australia: John Wiley & Sons.

Shah, A., Shanahan, E., Berendsen, E., Macdonald, G., Rich, J., Ghasemi, P., Hansen, T., Koloski, N., Burger, D., Keely, S., Walker, M., Talley, N. J., Morrison, M. and Holtmann, G. (2018). Quantitative polymerase chain reaction as a novel approach to determine influence of density of bacterial colonization on health and disease. Gastroenterological Society of Australia (GESA) Australian Gastroenterology Week (AGW) “Gut Matters”, Brisbane, QLD Australia, 8-10 September 2018. Richmond, VIC Australia: John Wiley & Sons.

Khosrotehrani, K., Matigian, N., Baz, B., Legrand, J., Muller, N., Morrison, M. and Walker, G. (2018). Natural history of bacterial composition in skin wounds and its relationship to healing. International Investigative Dermatology (IID) Meeting, Orlando, FL United States, 16-19 May 2018. New York, NY United States: Elsevier.

McMaster, Jessica J., Shanahan, Erin R., Rich, Graeme, Veronique, Chachay, Macdonald, Graeme, Morrison, Mark and Holtmann, Gerald J. (2018). Characterization of the mucosal- and device-associated microbiota following 48 weeks treatment with a duodenal-jejunal bypass sleeve (Endobarrier (E)). Annual Meeting of the American-Society-for-Gastrointestinal-Endoscopy / Digestive Disease Week, Washington, DC USA, 2-5 June 2018. Philadelphia, PA USA: Elsevier.

McMaster, Jessica J., Shanahan, Erin R., Rich, Graeme, Veronique, Chachay, Macdonald, Graeme, Morrison, Mark and Holtmann, Gerald J. (2018). The duodenal-jejunal bypass sleeve (Endobarrier (R)) induces transient changes in the stool microbiota. Annual Meeting of the American-Society-for-Gastrointestinal-Endoscopy / Digestive Disease Week, Washington, DC USA, 2-5 June 2018. Philadelphia, PA USA: Elsevier.

Burns, Grace, Shanahan, Erin, Anh Do, , Bruce, Jessica, Minahan, Kyra, Horvat, Jay, Foster, Paul, Holtmann, Gerald, Morrison, Mark, Walker, Marjorie M., Talley, Nicholas J. and Keely, Simon (2018). Seroreactivity to Microbial Antigens and Gut-Homing Immune Responses in Functional Dyspepsia Patients with Postprandial Distress Syndrome. Experimental Biology Meeting, San Diego Ca, Apr 21-25, 2018. BETHESDA: FEDERATION AMER SOC EXP BIOL.

McMaster, Jessica Jade, Rich, Graeme G., Shanahan, Erin R., Do, Anh T., Fletcher, Linda M., Kutyla, Marguerite J., Tallis, Caroline, Chachay, Veronique S., Morrison, Mark, Macdonald, Graeme A. and Holtmann, Gerald J. (2018). Mechanisms of Action for Weight Reduction in Patients Treated with a Duodenal-Jejunal Bypass Sleeve. Asian Pacific Digestive Week (APDW). Connecting Excellence on Gastroenterology and Hepatology in Asia‐Pacific, Seoul, Korea, 15–18 November 2018. Hoboken, NJ United States: Wiley.

Bahr, Constance, Moore, Peter, Shanahan, Erin R., Burn, Paul, Williams, Craig, Holtmann, Gerald J., deVoss, James and Morrison, Mark (2018). Mass spectrometric analysis of volatile organic compounds produced by duodenal microbiota. Annual Meeting of the American Society for Gastrointestinal Endoscopy / Digestive Disease Week, Washington, DC, United States, 2-5 June, 2018. Philadelphia, PA, United States: Elsevier. doi: 10.1016/s0016-5085(18)32307-2

Lim, Yenkai, Fukuma, Naoki, Totsika, Makrina, Kenny, Liz, Morrison, Mark and Punyadeera, Chamindie (2018). Oral microbiome biomarker panel to detect oral and oropharyngeal cancers in a clinical setting. Annual Meeting of the American-Association-for-Cancer-Research (AACR), Chicago, IL United States, 14-18 April 2018. Philadelphia, PA United States: American Association for Cancer Research. doi: 10.1158/1538-7445.AM2018-577

Shah, Ayesha, Morrison, Mark, Burger, Daniel, Martin, Neal, Rich, Justin, Jones, Mike, Koloski, Natasha, Walker, Marjorie, Talley, Nicholas and Holtmann, Gerald (2018). Systematic review and meta-analysis: Prevalence of small intestinal bacterial overgrowth in inflammatory bowel disease. Asian Pacific Digestive Week (APDW) Connecting Excellence on Gastroenterology and Hepatology in Asia‐Pacific, Seoul, Korea, 15–18 November 2018. Hoboken, NJ United States: Wiley-Blackwell.

Rehaume, Linda, Matigian, Nicholas, Ormerod, Kate, Kang, Alicia, Linedale, Richard, Zbarskaya, Olga, Kikly, Kristine, Daly, Joshua, Lachner, Nancy, Hugenholtz, Philip, Morrison, Mark, Le Cao, Kim-Anh and Thomas, Ranjeny (2017). IL-23 promotes fecal microbiota dysbiosis associated with susceptibility to spondyloarthritis and ileitis in ZAP-70 mutant SKG mice. ACR/ARHP Annual Meeting, San Diego, CA United States, 3-8 November 2017. Hoboken, NJ United States: John Wiley & Sons.

Moentadj, Rabia, Rehaume, Linda, Cuiv, Paraic O., Ormerod, Kate, Maradana, Muralidhara, Lakis, Vanessa Anne, Morrison, Mark, Hugenholtz, Philip, Benham, Helen, Le Cao, Kim-Anh and Thomas, Ranjeny (2017). Streptococcus Species Enriched in the Oral Cavity of RA Patients: A Persistent Source of Peptidoglycan-Polysaccharide Polymers Which Drive Disseminated Synovial Inflammation. 2017 ACR/ARHP Annual Meeting, San Diego CA, United States, 3–8 November 2017. Hoboken, NJ United States: John Wiley & Sons. doi: 10.1002/art.40321

Nitert, Marloes Dekker, Gomez-Arango, Luisa, Callaway, Leonie, McIntyre, H. David, Morrison, Mark and Barrett, Helen (2017). Women who develop hypertensive disorders of pregnancy have altered composition of the gut microbiota at 16 weeks gestation. ISSHP European Congress, Berlin, Germany, 6-9 September 2017. Amsterdam, Netherlands: Elsevier. doi: 10.1016/j.preghy.2017.07.034

Do, Anh , Shanahan, Erin R., Shah, Ayesha, Ghasemi, Pegah, Hansen, Teressa, Koloski, Natasha, Keely, Simon, Walker, Marjorie, Talley, Nick, Morrison, Mark and Holtmann, Gerald (2017). Mucosa-associated microbiota and specific peripheral T-cell populations modulate gut-homing integrin a4&b7. Asian Pacific Digestive Week (APDW). The Future in Digestive Diseases, Hong Kong, Hong Kong, 23–26 September 2017. Hoboken, NJ United States: Wiley.

Shanahan, Erin R., Shah, Ayesha, Do, Anh, Ghasemi, Pegah, Hansen, Teressa, Koloski, Natasha, Keely, Simon, Walker, Marjorie, Talley, Nicholas J., Morrison, Mark and Holtmann, Gerald (2017). Cigarette smoking and diversity of the duodenal mucosa associated microbiome. Asian Pacific Digestive Week (APDW). The Future in Digestive Diseases, Hong Kong, Hong Kong, 23–26 September 2017. Hoboken, NJ United States: Wiley.

Shanahan, Erin R., Cuiv, Paraic O., Koloski, Natasha, Morrison, Mark and Holtmann, Gerald (2016). Isolation of mucosa-associated bacteria from the duodenum in functional dyspepsia patients utilising the Brisbane Aseptic Biopsy Device. Gastroenterological Society of Australia, Australian Gastroenterology Week, Adelaide, SA, Australia, 10–12 October 2016. Hoboken, NJ, United States: Wiley-Blackwell.

Raj, Ashok S., Shanahan, Erin, Fletcher, Linda M., Tran, Cuong, Bhat, Purnima, Morrison, Mark, Holtmann, Gerald and Macdonald, Graeme A. (2016). Increased small intestinal permeability in chronic liver disease is associated with reduced abundance of Faecalibacterium prausnitzii in the terminal ileum mucosa. 67th Annual Meeting of the American-Association-for-the-Study-of-Liver-Diseases (AASLD), Boston, MA, United States, 11-15 November 2016. Hoboken, NJ, United States: John Wiley & Sons.

Raj, A. S., Shanahan, E. R., Fletcher, L. M., Tran, C. D., Morrison, M., Holtmann, G. and Macdonald, G. A. (2016). Gut permeability in chronic liver disease correlates with changes in the terminal ileum microbiota. Gastroenterological Society of Australia, Australian Gastroenterology Week, Adelaide, SA, Australia, 10–12 October 2016. Hoboken, NJ, United States: Wiley-Blackwell.

Jansen, Diahann, Klinken, Elizabeth, Nel, Hendrik, Law, Soi Cheng, Benham, Helen, Cummins, Lisa, Brown, Matthew, Kenna, Tony, Liu, Ligong, Fairlie, David, Rossjohn, Jamie, Morrison, Mark, Thomas, Ranjeny, Cuiv, Paraic O., McCluskey, James and Corbett, Alexandra (2016). Heightened MAIT Cell Sensitivity to MR1 Ligands Could Impact Control of Dysbiosis in Patients with Rheumatoid Arthritis and Ankylosing Spondylitis. 2016 ACR/ARHP Annual Meeting, Washington, DC, United States, 11-16 November 2016. Hoboken, NJ, United States: John Wiley & Sons. doi: 10.1002/art.39977

Raj, Ashok S., Shanahan, Erin R., Holtmann, Gerald, Hickman, Ingrid J., Fletcher, Linda, Tran, Cuong D., Morrison, Mark and Macdonald, Graeme (2016). Chronic Hepatitis C Is Associated With Dysbiosis of the Small Intestinal Microbiota and Altered Intestinal Permeability. Digestive Disease Week (DDW), San Diego Ca, May 20-24, 2016. PHILADELPHIA: W B SAUNDERS CO-ELSEVIER INC. doi: 10.1016/S0016-5085(16)30815-0

Raj, A. S., Shanahan, E., Holtmann, G., Hickman, I., Fletcher, L., Tran, C., Morrison, M. and Macdonald, G. (2016). Chronic Hepatitis C Is Associated with Dysbiosis of the Small Intestinal Microbiota and Altered Intestinal Permeability. EASL International Liver Congress, Barcelona, Spain, Apr 13-17, 2016. Amsterdam, Netherlands: Elsevier BV. doi: 10.1016/S0168-8278(16)00660-7

Gellatly, S., Dennis, P., Jarnicki, A., Lachner, N., Wood, D., Fricker, M., Budden, K., Liu, G., Keely, S., Morrison, M., Willner, D., Cooper, M., Hugenholtz, P. and Hansbro, P. (2016). Healthy gut microbiota ameliorates experimental chronic obstructive pulmonary disease. Annual Scientific Meeting of the Thoracic Society of Australia and New Zealand and the Australian and New Zealand Society of Respiratory Science 2014, Perth, WA, Australia, 1–6 April 2016. Hoboken, NJ United States: Wiley. doi: 10.1111/resp.12754_22

Rehaume, L. M., Kang, A., Zbarskaya, O., Mullaney, J. A., Kim, M., Cuiv, O. P., Angel, N., Lachner, N., Daly, J., Morrison, M., Hugenholtz, P. and Thomas, R. (2016). Profiling immunogenic bacteria within the microbiota of SKG mice associated with spondyloarthritis and ileitis using IgA-SEQ. International Congress of Immunology (ICI 2016), Melbourne, Australia, 21-26 August 2016. Weinheim, Germany: Wiley.

Rehaume, Linda, Matigian, Nicholas, Kang, Alicia, Zbarskaya, Olga, Kikly, Kristine, Lachner, Nancy, Daly, Joshua, Hugenholtz, Philip, Morrison, Mark, Le Cao, Kim-Anh and Thomas, Ranjeny (2016). Treatment of ZAP-70 Mutant SKG Mice with Anti-IL-23 Antibody Alters Fecal Microbiota Composition and Prevents Outgrowth of Bacteria Associated with Susceptibility to Spondyloarthritis and Ileitis. 2016 ACR/ARHP Annual Meeting, Washington, DC United States, 11–16 November 2016 . Hoboken, NJ United States: Wiley.

Benham, Helen, Maradana, Muralidhara, Lakis, Vanessa Anne, Cuiv, Paraic O., Wood, John, Nagl, Lisa, Rammouth, Nishta, Owens, Clare, Daly, Joshua., Lachner, Nancy, Morrison, Mark, Hugenholtz, Philip, Le Cao, Kim-Anh and Thomas, Rarljeny (2016). Distinct Oral and Fecal Community Profiles Enriched in Opportunistic Pathogens in RA Patients and First Degree Relatives Are Influenced By Environmental Risk Factors, Including Smoking, Dental History and Lung Infection. 2016 ACR/ARHP Annual Meeting, Washington, DC, 11-16 November 2016. Hoboken, NJ, United States: John Wiley & Sons.

Shanahan, E. R., Raj, A., Macdonald, G., Morrison, M. and Holtmann, G. (2015). The duodenal mucosal microbiota following bowel preparation. GESA-AGW and WGO International Congress, Gastroenterological Society of Australia Australian Gastroenterology Week, Brisbane, QLD, Australia, 28 September-2 October 2015. Hoboken, NJ, United States: Wiley-Blackwell.

Raj, A., Shanahan, E., Holtmann, G., Lassemillante, A., Fletcher, L., Morrison, M. and Macdonald, G. (2015). Changes in the duodenal microbiota in chronic liver disease. GESA-AGW and WGO International Congress, Gastroenterological Society of Australia Australian Gastroenterology Week 2015 | World Congress of Gastroenterology, Brisbane, QLD, Australia, 28 September-2 October 2015. Hoboken, NJ, United States: Wiley-Blackwell.

Rehaume, L., Zbarskaya, O., Kang, A., Bhuyan, Z., Ruscher, R., Benham, H., O Cuiv, P., Morrison, M. and Thomas, R. (2015). A Gender Bias in Gut Microbiota of Skg Mice Colonized with a Limited Bacterial Consortium Associated with Severity of Spondyloarthritis and Ileitis Triggered by Beta-Glucan. Australian Rheumatology Associationin conjunction with Rheumatology Health Professionals Association, 56th Annual Scientific Meeting, Adelaide, SA, Australia, 23–26 May 2015. Richmond, VIC, Australia: Wiley-Blackwell. doi: 10.1111/imj.12752

Rehaume, Linda, Kang, Alicia, Zbarskaya, Olga, Mullaney, Jane, Kim, Matthew, Cuiv, Paraic O., Angel, Nicola, Hugenholtz, Philip, Morrison, Mark and Thomas, Ranjeny (2015). Profiling Immunogenic Bacteria within the Microbiota of ZAP-70 Mutant SKG Mice Associated with Spondyloarthritis and Ileitis Using IgA-SEQ. 2015 ACR/ARHP Annual Meeting, San Francisco, CA, United States, 6-11 November 2015. Hoboken, NJ, United States: John Wiley & Sons.

Rehaume, Linda, Zbarskaya, Olga, Kang, Alicia, Benham, Helen, Cuiv, Paraic O., Morrison, Mark and Thomas, Ranjeny (2014). A gender bias in gut microbiota of SKG mice colonized with a limited bacterial consortium associated with severity of spondyloarthritis and ileitis triggered by beta-glucan. 78th Annual Meeting of the American-College-of-Rheumatology (ACR) / 49th Meeting of the Association-of-Rheumatology-Health-Professionals (ARHP), Boston, MA USA, 14-19 November 2014. Hoboken, NJ USA: John Wiley & Sons.

Shah, A., Talley, N. J., Walker, M., Koloski, N., Shanahan, E. R., Morrison, M., Burger, D., Andrews, J. M., Mcguckin, M., Jones, M. and Holtmann, G. (2014). Is geographic variability of incidence and prevalence of Crohn's Disease linked to Helicobacter pylori? An ecologic study. Australian Gastroenterology Week 2014, Broadbeach, QLD Australia, 22-24 October 2014. Richmond, VIC Australia: Wiley-Blackwell Publishing Asia. doi: 10.1111/jgh.12736_6

Prideaux, L., Kang, S., Wagner, J., Buckley, M., Mahar, J. E., De Cruz, P., Wen, Z., Chen, L., Xia, B., Van Langenberg, D. R., Lockett, T., Ng, S. C., Sung, J. J., Desmond, P., Mcsweeney, C., Morrison, M., Kirkwood, C. D. and Kamm, M. A. (2013). Escalating incidence of IBD in the East and West - Is the microbiota the key? impact of ethnicity, geography, and disease on the microbiota. The ENIGMA study. Australian Gastroenterology Week 2013, Melbourne Australia, 7-9 October 2013. Richmond, Australia: Wiley-Blackwell Publishing Asia. doi: 10.1111/jgh.12365_2

Rehaume, Linda, Mondot, Stanislas, Aguirre de Cárcer, D., Velasco, Jared, Benham, Helen, Hasnain, Sumaira, Bowman, Jaclyn, Ruutu, Merja, Hansbro, Philip, McGuckin, Michael, Morrison, Mark and Thomas, Ranjeny (2013). Host Genetic Background Disrupts The Relationship Between Microbiota and Gut Mucosal Tolerance Leading To Spondyloarthritis and Ileitis After a Dectin-1 Trigger.. 77th Annual Meeting of the American College of Rheumatology / 48th Annual Meeting of the Association of Rheumatology Health Professionals, San Diego Ca, 25-30 October 2013. Hoboken, NJ United States: John Wiley and Sons Inc.. doi: 10.1002/art.38216

Rehaume, L., Mondot, S., Aguirre de Cárcer, D., Velasco, J., Benham, H., Hasnain, S., Ruutu, M., McGuckin, M. and Morrison, M. (2013). Incidence and Severity of Spondyloarthritis and Ileitis Are Determined by Interaction Between the Microbiota and Genetic Susceptibility in Beta-Glucan-Treated Skg Mice. 54th Annual Scientific Meeting of the Australian Rheumatology Association in conjunction with the Rheumatology Health Professionals Association, Perth, WA Australia, 18 -22 May 2013. Richmond, VIC Australia: Wiley-Blackwell Publishing Asia. doi: 10.1111/imj.12139

Iyngkaran, Guru, Kang, Seungha, McSweeney, Chris, Sivanesan, Suresh, Kangaharan, Nadarajah, Morrison, Mark and Macrae, Finlay A. (2013). Tu1693 Indigenous Australians (IA) Have a Distinctive Gut Microbial Profile Compared to Patients With Inflammatory Bowel Disease (IBD) and Non Indigenous Controls. 2013 Digestive Disease Week, Orlando, Florida, 18-21 May 2013. Philadelphia, PA, United States: Elsevier. doi: 10.1016/s0016-5085(13)63057-7

De Cruz, Peter, Kang, Seungha, Sim, Winnie H., Buckley, Michael, Wagner, Josef, Prideaux, Lani, Morrison, Mark, Mcsweeney, Chris, Kirkwood, Carl and Kamm, Michael A. (2012). Gut microbiota at the time of Crohn's resection predicts development of disease recurrence.

Iyngkaran, Guru, Mcsweeney, Chris, Kang, Seungha, Sivanesan, Suresh, Morrison, Mark and Macrae, Finlay (2012). Indigenous Australians (IA) have a distinctive gut microbial profile compared to patient's with inflammatory bowel disease (IBD) and non indigenous controls. Digestive Disease Week, Orlando Fl, May 18-21, 2013. W B SAUNDERS CO-ELSEVIER INC.

Thomas, Ranjeny, Rehaume, Linda, Aguirre de Cárcer, Daniel, Mondot, Stan, Velasco, Jared, Benham, Helen, Ruutu, Merja, Morrison, Mark and McGuckin, Michael (2012). Incidence and severity of spondyloarthritis and Crohn's Ileitis are determined by interaction between the microbiota and genetic susceptibility in beta-glucan-treated SKG mice. Annual Scientific Meeting of the American-College-of-Rheumatology (ACR) and Association-of-Rheumatology-Health-Professionals (ARHP), Washington, DC, United States, 9-14 November 2012. Hoboken, NJ, United States: John Wiley & Sons. doi: 10.1002/art.37735

Rehaume, L., Aguirre de Cárcer, D., Velasco, J., Benham, H., Ruutu, M., Mondot, S., Morrison, M. and McGuckin, M. (2012). The role of intestinal microbiota in the development of spondyloarthritis in fungal beta-glucan-treated autoimmune prone skg mice. 53rd Annual Scientific Meeting of the Australian Rheumatology Association in conjunction with Rheumatology Health Professionals, Canberra ACT, Australia, 12-15 May 2012. Richmond Vic., Australia: Wiley-Blackwell Publishing Asia. doi: 10.1111/j.1445-5994.2012.02759.x

Morrison, Mark, Mondot, Stanislas, Klaassens, Eline S. and Ó Cuív, Páraic (2012). Transcriptomic responses of Bacteroides vulgatus PC510 to faecal water additions to complex medium. unknown, unknown, unknown. HOBOKEN: WILEY-BLACKWELL.

De Carcer, D. Aguirre, Oancea, I., Das, I., Mcguckin, M., Duley, J., Morrison, M. and Florin, T. (2011). Microbiome shifts with 6-thioguanine provide insights about IBD and its treatment. Australian Gastroenterology Week 2011, South Bank, QLD, Australia, 12–15 September 2011. MALDEN: WILEY-BLACKWELL. doi: 10.1111/j.1440-1746.2011.06820.x

Ruutu, Merja, Velasco, Jared, Aguirre, Daniel, Benham, Helen, Morrison, Mark, McGuckin, Michael and Thomas, Ranjeny (2011). The Role of Gut Microflora and Autoreactive CD4+T Cells in the Development of Spondyloarthritis and Inflammatory Bowel Disease in Beta-Glucan-Treated SKG Mice. 75th Annual Scientific Meeting of the American College of Rheumatology/46th Annual Scientific Meeting of the Association of Rheumatology Health Professionals, Chicago, IL, United States, 4-9 November 2011. Hoboken, NJ, United States: John Wiley & Sons. doi: 10.1002/art.33310

Klaassens, Eline S., Wang, Tingting, Tolls, Elisabeth H., McWilliam, Sean, Zhao, Li-Ping, Ó Cuív, Páraic and Morrison, Mark (2011). Insight Into Differential Gene Expression of Enterococcus Faecium, an IBD Associated Bacterium, Using RNA-Seq. Conference on Digestive Disease Week 2011, Chicago Il, May 07-10, 2011. W B SAUNDERS CO-ELSEVIER INC.

De Cruz, Peter P., Kang, Seungha, Prideaux, Lani, McSweeney, Chris, Morrison, Mark and Kamm, Michael A. (2011). Prospective Evaluation of the Mucosa-Associated Microbiota After “Curative” Crohn's Resection Reveals Incomplete Return to “Normal” and Association of Bacteroides With Protection From Disease Recurrence. 2011 Digestive Disease Week , Chicago, Illinois, 7-10 May 2011. Philadelphia, PA, United States: Elsevier. doi: 10.1016/s0016-5085(11)61325-5

Gupta, R., Klieve, A. V., Morrison, M., Ouwerkerk, D. and Zhang, L.H. (2010). Methanogenic archaebacteria possess host-specific proteomic profiles, as revealed by two dimensional differential in gel electrophoresis (2D-DIGE) and mass spectrometry analyses. 15th Lorne Proteomics Symposium, Lorne VIC, Australia, 4-7 February 2010.

Altermann, E., Kelly, W., Leahy, S., Lambie, S., Janssen, P. H., Zhang, L., Klieve, A., Ouwerkerk, D., Morrison, M. and Attwood, G. (2010). A comparative genomics analysis of rumen methanogens. Greenhouse Gases and Animal Agriculture Conference 2010, Banff, Alberta, Canada, 3-8 October , 2010.

Morrison, M. (2010). Out of the black box and back to the future: New frontiers and challenges for rumen microbiology to advance animal growth and development.. Growth and Development Symposium: Intestinal Development and Growth, Unknown, 2010. NEW YORK: ELSEVIER SCIENCE INC.

Kang, Seungha, Gupta, Arun, Wagner, Josef, Macrae, Finlay A., Morrison, Mark and McSweeney, Chris (2010). T1805 Analysis of the Mucosal Microbiota From Inflammatory Bowel Disease Biopsy Tissues Using a Custom 16s rRNA Based Phylogenetic Microarray. 2010 Digestive Disease Week, New Orleans, Louisiana, 1-5 May 2010. Philadelphia, PA, United States: Elsevier. doi: 10.1016/s0016-5085(10)62683-2

Christophersen, C. T., Kang, S., Mcsweeney, C., Morrison, M., Roberts-Thomson, I. and Conlon, M. A. (2009). The gut microflora of individuals with ulcerative colitis (remission or mild) differs from healthy individuals. MALDEN: WILEY-BLACKWELL PUBLISHING, INC.

Denman, S., Padmanabha, J., Gagen, E., Morrison, M. and McSweeney, C. (2009). Analysis of Key Reductive Acetogenesis Enzymes from Microbial Enrichments from the Cattle Rumen.. NEW YORK: SPRINGER.

De Carcer, D. Aguirre, O Cuiv, P., Wang, T., Reverter, T., Worthley, D., Whitehall, V., Klaassens, E. S., Kang, S., Denman, S., Young, G., Legget, B., McSweeney, C. and Morrison, M. (2009). Application of numerical ecology methods to microarray data reveals obscured patterns in the mucosa-associated microbial community of the human colorectum. Australia and New Zealand Medical and Surgical Gastrointestinal Week 2009, Sydney, NSW Australia, 21‐24 October 2009. Richmond, VIC Australia: Wiley-Blackwell Publishing Asia.

Pope, P., Denman, S., Tringe, S., Hinds, L., Hugenholtz, P., McSweeney, C. and Morrison, M. (2009). Characterization and development of a systems-level understanding of microbial metabolism in the foregut microbiome of the Tammar wallaby (Macropus eugenii).. 2009 Conference on Gastrointestinal Function, Chicago, USA, 20-22 April, 2009. New York, NY, United States: Springer. doi: 10.1007/s00248-009-9496-x

Yu, Z. and Morrison , M. (2007). Antimicrobial resistance genes in livestock production systems: Concepts and consequences. 7th International Symposium on the Nutrition of Herbivores, Beijing, China, 17-22 September 2007. Beijing, China: China Agricultural University Press.

Morrison, M. and Yu, Z. (2006). Ruminal nitrogen metabolism: The current microbiological outlook.. SAVOY: AMER SOC ANIMAL SCIENCE.

Morrison, Mark and Nelson, Karen E. (2005). Rumen microbial genomics. FAO/IAEA International Symposium on Application of Gene-Based Technologies for Improving Animal Production and Health in Developing Countries, Vienna, Austria, 6-10 October, 2003. Dordrecht, The Netherlands: Springer. doi: 10.1007/1-4020-3312-5_26

Peng, L. and Morrison, M. (1997). Characterization of a gene from Prevotella ruminicola strain B14 which complements an E. coli mutant defective in peptide transport.

White, BA, Cann, IKO, Mackie, RI and Morrison, M (1997). Cellulase and xylanase genes from ruminal bacteria: Domain analysis suggests a non-cellulosome-like model for organization of the cellulase complex. Satellite Symposium on Rumen Microbes and Digestive Physiology in Ruminants, at the 8th Animal Science Congress, Kyoto Japan, Oct, 1996. BASEL: KARGER.

Morrison, M (1996). Pending advances in understanding nitrogen and carbon metabolism by ruminal microorganisms. John-Lee-Pratt International Symposium on Nutrient Management of Food Animals to Enhance and Protect the Environment, Blacksburg Va, Jun 04-07, 1996. BOCA RATON: CRC PRESS-TAYLOR & FRANCIS GROUP.

Professor Mark Morrison

Research projects

Areas of research

Professor Mark Morrison

Research projects

Publications

Book Chapters

Journal Articles

Conference Papers

Areas of research